Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa4g03898 | ATGGGTACTTCCATTCCTTGCGTTCAGAGGATTTCAAAGTCCCCTTCACCGTCACCCTGGAAGGCTCAATCAAGATCACGATCGAGATCAAGGTCGAGGTCTGTGCCTAGACAAAGACCAAGATCTGACTCCAGAGGCCGTGGCAGATCAAGGTCTCGGAGCCCGGAAAGGGCGGCCAATCCTACAAATCCTGGTAATACACTTTATGTTACTGATCTATCTTCAAGGGTCACTAAGAGGGACCTAGAGGACCATTTTTCCAAGGAGGGAAAAGTTGCTTCATGCTTTCTTGTAGTGGAGCCACGTACCCGAATTTCTTGTGGTTTTGCTTTTGTTACTATGGATTCCCACGAGGATGCTGAGCGGTGTATCAAGCATCTCAACCCATCAGTTTTAGAGGGCCTCTATGTCACCGTAGAACGGTCAAGAAGAAAGCGTGCAAGAACTCCAACACCAAGGCACTATCTTGGGCTGAAGAATACTAGAGACTATGGCTCTCATGGTGACAATCGTGATGACTATCGTGGCGGAAATCGCGGTGAATTTTACATTTTAGGGGTAAATTTCTCTTGGAAACATTTTTAG | 585 | 0.4684 | MGTSIPCVQRISKSPSPSPWKAQSRSRSRSRSRSVPRQRPRSDSRGRGRSRSRSPERAANPTNPGNTLYVTDLSSRVTKRDLEDHFSKEGKVASCFLVVEPRTRISCGFAFVTMDSHEDAERCIKHLNPSVLEGLYVTVERSRRKRARTPTPRHYLGLKNTRDYGSHGDNRDDYRGGNRGEFYILGVNFSWKHF | 194 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa4g03898 | 194 | MobiDBLite | consensus disorder prediction | 1 | 69 | - | - | |
Vifa4g03898 | 194 | MobiDBLite | consensus disorder prediction | 36 | 54 | - | - | |
Vifa4g03898 | 194 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 68 | 134 | IPR000504 | GO:0003723 | |
Vifa4g03898 | 194 | Gene3D | - | 11 | 151 | IPR012677 | - | |
Vifa4g03898 | 194 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 66 | 144 | IPR000504 | GO:0003723 | |
Vifa4g03898 | 194 | MobiDBLite | consensus disorder prediction | 55 | 69 | - | - | |
Vifa4g03898 | 194 | CDD | RRM_SF | 68 | 140 | - | - | |
Vifa4g03898 | 194 | SMART | rrm1_1 | 67 | 140 | IPR000504 | GO:0003723 | |
Vifa4g03898 | 194 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
Vifa4g03898 | 194 | SUPERFAMILY | RNA-binding domain, RBD | 59 | 174 | IPR035979 | GO:0003676 | |
Vifa4g03898 | 194 | PANTHER | TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED | 51 | 171 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa4g03898 | Vifa-Chr4 | 1245704253 | 1245706131 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa4g03898 | 66 | 150 | Eukaryotic Initiation Factors Gene Family | AT5G06000 | 36.471 | 2.61e-08 | 50.8 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa4g03898 | K12897 | - | gmx:100800398 | 207.608 |