Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03898 ATGGGTACTTCCATTCCTTGCGTTCAGAGGATTTCAAAGTCCCCTTCACCGTCACCCTGGAAGGCTCAATCAAGATCACGATCGAGATCAAGGTCGAGGTCTGTGCCTAGACAAAGACCAAGATCTGACTCCAGAGGCCGTGGCAGATCAAGGTCTCGGAGCCCGGAAAGGGCGGCCAATCCTACAAATCCTGGTAATACACTTTATGTTACTGATCTATCTTCAAGGGTCACTAAGAGGGACCTAGAGGACCATTTTTCCAAGGAGGGAAAAGTTGCTTCATGCTTTCTTGTAGTGGAGCCACGTACCCGAATTTCTTGTGGTTTTGCTTTTGTTACTATGGATTCCCACGAGGATGCTGAGCGGTGTATCAAGCATCTCAACCCATCAGTTTTAGAGGGCCTCTATGTCACCGTAGAACGGTCAAGAAGAAAGCGTGCAAGAACTCCAACACCAAGGCACTATCTTGGGCTGAAGAATACTAGAGACTATGGCTCTCATGGTGACAATCGTGATGACTATCGTGGCGGAAATCGCGGTGAATTTTACATTTTAGGGGTAAATTTCTCTTGGAAACATTTTTAG 585 0.4684 MGTSIPCVQRISKSPSPSPWKAQSRSRSRSRSRSVPRQRPRSDSRGRGRSRSRSPERAANPTNPGNTLYVTDLSSRVTKRDLEDHFSKEGKVASCFLVVEPRTRISCGFAFVTMDSHEDAERCIKHLNPSVLEGLYVTVERSRRKRARTPTPRHYLGLKNTRDYGSHGDNRDDYRGGNRGEFYILGVNFSWKHF 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03898 194 MobiDBLite consensus disorder prediction 1 69 - -
Vifa4g03898 194 MobiDBLite consensus disorder prediction 36 54 - -
Vifa4g03898 194 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 68 134 IPR000504 GO:0003723
Vifa4g03898 194 Gene3D - 11 151 IPR012677 -
Vifa4g03898 194 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 66 144 IPR000504 GO:0003723
Vifa4g03898 194 MobiDBLite consensus disorder prediction 55 69 - -
Vifa4g03898 194 CDD RRM_SF 68 140 - -
Vifa4g03898 194 SMART rrm1_1 67 140 IPR000504 GO:0003723
Vifa4g03898 194 MobiDBLite consensus disorder prediction 1 25 - -
Vifa4g03898 194 SUPERFAMILY RNA-binding domain, RBD 59 174 IPR035979 GO:0003676
Vifa4g03898 194 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 51 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03898 Vifa-Chr4 1245704253 1245706131 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03898 66 150 Eukaryotic Initiation Factors Gene Family AT5G06000 36.471 2.61e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03898 K12897 - gmx:100800398 207.608