Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03893 ATGGAAAACCCTTCAGAAATGGGTAACAGAAAACGTGCTCGAGAATTGGGTGCTACTACAAAACCCGAAGAAGTTCTTCAAGTTGAACGTGAACGAAGGAAGAAAATGTCTCAAATGTTCACTCACCTTGCTACCACTGTCCCTGCTCTTCATCCTACAGCTACTAAGGAAATGATTATAAACGAAACAATTGCGTACATTAAGGAACTCGAGAGCAAGAAGAAAATGTTAGAGGAGATTAAGGAATCCAACGAGTTTCCGGTGGTTGAAGGGAGTTTCAATTTGTTGGTTCCGTGTCGGAACAGAAATTGCTCTGTTTCTGTTACGGTTTCTTCTAACAATGTAGCTTTCTTTGGGATTGAATCTGTGGCGAAACGTGGTTTGGTTACTGTGATTTTTGAGGTGTTTTTTAAGAACCAAATGGAGATTTTAGGGGCGAATGTTTCTGTTAATGATGGAAATTTGAGATTGGCGATTACTGCCTTGGTTCAAAACAATGGGCGGATTGAGAAGATTAAGACAGAGATTATGGGTTTGTAG 540 0.4019 MENPSEMGNRKRARELGATTKPEEVLQVERERRKKMSQMFTHLATTVPALHPTATKEMIINETIAYIKELESKKKMLEEIKESNEFPVVEGSFNLLVPCRNRNCSVSVTVSSNNVAFFGIESVAKRGLVTVIFEVFFKNQMEILGANVSVNDGNLRLAITALVQNNGRIEKIKTEIMGL 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03893 179 Pfam Helix-loop-helix DNA-binding domain 28 71 IPR011598 GO:0046983
Vifa4g03893 179 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 27 86 IPR036638 GO:0046983
Vifa4g03893 179 MobiDBLite consensus disorder prediction 1 22 - -
Vifa4g03893 179 Gene3D - 17 85 IPR036638 GO:0046983
Vifa4g03893 179 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 20 70 IPR011598 GO:0046983
Vifa4g03893 179 SMART finulus 26 76 IPR011598 GO:0046983
Vifa4g03893 179 PANTHER BHLH DOMAIN-CONTAINING PROTEIN 28 81 IPR044278 GO:0003700|GO:0006355|GO:0009960
Vifa4g03893 179 Coils Coil 60 80 - -
Vifa4g03893 179 CDD bHLH_AtbHLH_like 29 78 IPR045239 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03893 26 78 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 45.283 3.82e-08 50.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa4g03893 HLH 3.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03893 - - psat:127073348 251.521