LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa4g03893	ATGGAAAACCCTTCAGAAATGGGTAACAGAAAACGTGCTCGAGAATTGGGTGCTACTACAAAACCCGAAGAAGTTCTTCAAGTTGAACGTGAACGAAGGAAGAAAATGTCTCAAATGTTCACTCACCTTGCTACCACTGTCCCTGCTCTTCATCCTACAGCTACTAAGGAAATGATTATAAACGAAACAATTGCGTACATTAAGGAACTCGAGAGCAAGAAGAAAATGTTAGAGGAGATTAAGGAATCCAACGAGTTTCCGGTGGTTGAAGGGAGTTTCAATTTGTTGGTTCCGTGTCGGAACAGAAATTGCTCTGTTTCTGTTACGGTTTCTTCTAACAATGTAGCTTTCTTTGGGATTGAATCTGTGGCGAAACGTGGTTTGGTTACTGTGATTTTTGAGGTGTTTTTTAAGAACCAAATGGAGATTTTAGGGGCGAATGTTTCTGTTAATGATGGAAATTTGAGATTGGCGATTACTGCCTTGGTTCAAAACAATGGGCGGATTGAGAAGATTAAGACAGAGATTATGGGTTTGTAG	540	0.4019	MENPSEMGNRKRARELGATTKPEEVLQVERERRKKMSQMFTHLATTVPALHPTATKEMIINETIAYIKELESKKKMLEEIKESNEFPVVEGSFNLLVPCRNRNCSVSVTVSSNNVAFFGIESVAKRGLVTVIFEVFFKNQMEILGANVSVNDGNLRLAITALVQNNGRIEKIKTEIMGL	179

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa4g03893	179	Pfam	Helix-loop-helix DNA-binding domain	28	71	IPR011598	GO:0046983
	Vifa4g03893	179	SUPERFAMILY	HLH, helix-loop-helix DNA-binding domain	27	86	IPR036638	GO:0046983
	Vifa4g03893	179	MobiDBLite	consensus disorder prediction	1	22	-	-
	Vifa4g03893	179	Gene3D	-	17	85	IPR036638	GO:0046983
	Vifa4g03893	179	ProSiteProfiles	Myc-type, basic helix-loop-helix (bHLH) domain profile.	20	70	IPR011598	GO:0046983
	Vifa4g03893	179	SMART	finulus	26	76	IPR011598	GO:0046983
	Vifa4g03893	179	PANTHER	BHLH DOMAIN-CONTAINING PROTEIN	28	81	IPR044278	GO:0003700\|GO:0006355\|GO:0009960
	Vifa4g03893	179	Coils	Coil	60	80	-	-
	Vifa4g03893	179	CDD	bHLH_AtbHLH_like	29	78	IPR045239	-

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa4g03893	26	78	Basic Helix-Loop-Helix Transcription Factor Gene Family	AT1G49770	45.283	3.82e-08	50.1

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bHLH	Vifa4g03893		HLH	3.1e-07	No_clan

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa4g03893	-		-	psat:127073348	251.521

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