Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03889 ATGTCGCGACGGTTAACAAACCGCCATAAAATACACATCACGACGGTCCAAAAGCTTCTCCTTTTTTCTCTTCTCGTCGCTGCCCGACATCACCGGCTTCCACCACAACCATGTCTTCTCTTCATTTCAACCTCCATCCACTCCCTCCATCTTCATCTCCACTACTCACCACCACCAACAACATTTCTTCCTTCTCCCCCACTTCCCTCTCCATCTTCTACAACAACCACCACCACCTTCTTCGCTTCAATCTCATCGGGATTTGAAGCCGCAGAATTTGCTTCTCGATCAACAGCAAGGGATTTGAAGATTGCTGATCTTGGTCTTGGGAGGGCTTTTACCGTCTCGCTTAAGAGTTATACTCATGAGATTGTTACTCTTTGGTATAGAGCTCCTGAAGTTTTGCTTGGATCTACTACCTACTCTACTAGAGTTGATATCTGGTCTGTTGGATGTATCTTTGGTGGATTCGTGGCAGTGATGTGTAGCGGAACTCAAATGGAAATACCCTACAAAACATCAGAAGAATCGTCTGGTTCATCATCATCATTTTCGAACGAATTTGTTGCGATTAAGATGCCATTAACACCGAGTCCAACTCCGACTCACAAGAAGGTGAATTTTCTTGTGACTTCACGTTCTGTTGATGCTGCTCCAATTGTGGATAGTGATAGTAACAATCTAGGGAATTTGACCACAAGAGGAAAATCGTCGAGTGCTAGAAGTATTATGCCGAAATTGAACTTTCCGTATAATAGGACTTCATCATCTGATGTTGAAAAGGCGATAAGTTTGGCTCCGGAAAGTCCTTGTGAGAAGCCTTCTGTCTCTGGATCAGGATCAGTGTCTTTGAGTAAGCTGTTTGCTCCTAAGATTTATAGAACTTCTTCGCTACCGGTTGAAGAAATCGGGCGTGTTAATAATGAGTTTGCTTTTGGTGGATGTCTTGGTGCTTCTCCATATAGAAGCCAGGGATCGATAGCTCGCACTCGTTCAGAGCCGGTAGATAGCAAAGAAAAAATCATAAGGAAAATGGATAAGTTTTTCCGCATTATTCCTTCCACCCCAGGTGCAAAGGAAGTTAAAGAATGGTTAAAAGCTTCTGCAGAAAAGGATACAGAAAATGGCGGTGATGACGTTGAAGATATAGCTGAAGAGGAAGTTGTGTGTAGGATTTGTCTGATTGAGCTATGTGAAGGAGGTGAGACGCTGAAGATGGAATGCAGTTGCAGAGGTGAACTTGCATTGGCTCACCAAGAATGCGCTATCAAGTGGTTCAGTATCAGGGGTAACAAGACATGTGATGTGTGCAAGCAAGAAGTTCAGAATCTCCCTGTCACTCTCTTACGCATCCAAAATGTTCAAACTCAGAATACCGGAGCAAGGTCTCAGCAGGAAGACGACTTCAGGCATGTGCAGTTATTTTCATTTGATAAAAACTATTACTCGGTTTGGCAGGAGTTACCTGTGCTTGTCATTGTCAGCATGCTTGCTTATTTCTGTTTCCTTGAGCAGCTTTTGGATACTGTTACTCCGGTTAATTTGATTGGTTATGGGTTGGCGTTTTTGGGGGTTGCGTATTATAATCATTCCAAGTTGCAGGCGCTTAAGGCTTCGGAGACGCAGAAGAAGGCTCTTCAGAATGATGAAGAGGCTGGAAGGTTGTTGGAACAGAGAGACGGAGAAGGGACTGGAAGGAAGATCGACATTCATGAATTTTGTAGAATATTCATAATCGGAAACGGAACTGGTACTATCTTTTGGCAATCAAACTGGTTGGGGTCGCAAACATTGCAGGAAGCGTTTCCTGAGATTTTTCCCATGCTAGTAGAAGGGTTGGCAGTGTCGAGGAAGCAGGTAGCTGGGATGGCTCAGTTCGTTCTTGGAACGTTGAAAGCTCGGTGGATAACATGGAGGAAATTGAGACATGAATCTGGGCGGAATTTGTCAATCTGCTGCAGAATGTTTCTTTGGACAGTAACGTTAGCGATGCGTACGAGTGGCGGATTGGAAAGTGAGGTAATTTCTCGGTAA 2034 0.441 MSRRLTNRHKIHITTVQKLLLFSLLVAARHHRLPPQPCLLFISTSIHSLHLHLHYSPPPTTFLPSPPLPSPSSTTTTTTFFASISSGFEAAEFASRSTARDLKIADLGLGRAFTVSLKSYTHEIVTLWYRAPEVLLGSTTYSTRVDIWSVGCIFGGFVAVMCSGTQMEIPYKTSEESSGSSSSFSNEFVAIKMPLTPSPTPTHKKVNFLVTSRSVDAAPIVDSDSNNLGNLTTRGKSSSARSIMPKLNFPYNRTSSSDVEKAISLAPESPCEKPSVSGSGSVSLSKLFAPKIYRTSSLPVEEIGRVNNEFAFGGCLGASPYRSQGSIARTRSEPVDSKEKIIRKMDKFFRIIPSTPGAKEVKEWLKASAEKDTENGGDDVEDIAEEEVVCRICLIELCEGGETLKMECSCRGELALAHQECAIKWFSIRGNKTCDVCKQEVQNLPVTLLRIQNVQTQNTGARSQQEDDFRHVQLFSFDKNYYSVWQELPVLVIVSMLAYFCFLEQLLDTVTPVNLIGYGLAFLGVAYYNHSKLQALKASETQKKALQNDEEAGRLLEQRDGEGTGRKIDIHEFCRIFIIGNGTGTIFWQSNWLGSQTLQEAFPEIFPMLVEGLAVSRKQVAGMAQFVLGTLKARWITWRKLRHESGRNLSICCRMFLWTVTLAMRTSGGLESEVISR 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03889 677 ProSiteProfiles Zinc finger RING-CH-type profile. 382 444 IPR011016 GO:0008270
Vifa4g03889 677 SMART ringv_2 389 438 IPR011016 GO:0008270
Vifa4g03889 677 SUPERFAMILY Protein kinase-like (PK-like) 101 157 IPR011009 -
Vifa4g03889 677 CDD RING_CH-C4HC3_MARCH 390 438 - -
Vifa4g03889 677 SMART serkin_6 5 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g03889 677 Pfam Protein kinase domain 99 155 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g03889 677 SUPERFAMILY RING/U-box 386 441 - -
Vifa4g03889 677 ProSiteProfiles Protein kinase domain profile. 1 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g03889 677 Gene3D Transferase(Phosphotransferase) domain 1 99 158 - -
Vifa4g03889 677 PANTHER OS02G0165000 PROTEIN 166 509 - -
Vifa4g03889 677 Pfam RING-variant domain 390 437 IPR011016 GO:0008270
Vifa4g03889 677 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 375 445 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03889 Vifa-Chr4 1242030631 1242036252 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03889 102 158 Core Cell Cycle Gene Families AT3G54180 87.719 9.55e-26 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-Pl Vifa4g03889 Pkinase 1.8e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03889 - - cam:101488558 461.07