Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03883 ATGTCGCGACGGTCCAAAAGCTTCTCCTTTTTTCTCTTCTCGTCGCTGCCCGACATCACCGGCTTCCACCACAACCATGTCTTCTCTTCATTTCAACCTCCATCCACTCCCTCCATCTTCATCTCCACTACTCACCACCACCAACAACATTTCTTCCTTCTCCCCCACTTCCCTCTCCATCTTCTACAACAACCACCACCACCTTCTTTGCTTCAATCTCATCGGGATTTGAAGCCGCATAATTTGCTTCTCGATCAACATCAAGGGATTTTGAAGATTGCTGATCTTGGTCTTGGGAGGGCTTTTACCGTCCCGCTTAAGAGTTATACTCATGAGATTGTTACTCTTTGGTATAGAGCTCCTGAAGTTTTGCTTGGATCTACTACCTACTCTACTAGAGTTGATATCTGGTCTGTTGGATGTATCTTTGCTGAAATGGGTAATGCGGAGAAGTCCAGAATAATTATGGTCGGTGATACTTTGAAGAAAGCTGGTGATTCATCTCAGAATAGTCTTGTTAAAGACGTTGGAGATACACACTTGGTTCTTGAGAGGCCAGCATCTACATTTCCCATTCAACTACTGCATAGTAAGACAAACGATCTTGAAATAATAAATTGTATGTTGTGTTGTATAGTACAGTATATCAATAAGTCTTTCAATAAATCGTGGTTGGTGCTTCATGTTGCGTTTCTTGTTCTAATTTGTGTTACCCTCTTCTTTCTTCTTAGCTGGTTTCTTGCAGAAACTGGTTTAGTCTCTGTTGAACATCAAATGCGAGAGATGGGCTTGGACGTTAAGGCTCCTGTAGAGACTGACAAAAAGGCCGAATAA 834 0.4233 MSRRSKSFSFFLFSSLPDITGFHHNHVFSSFQPPSTPSIFISTTHHHQQHFFLLPHFPLHLLQQPPPPSLLQSHRDLKPHNLLLDQHQGILKIADLGLGRAFTVPLKSYTHEIVTLWYRAPEVLLGSTTYSTRVDIWSVGCIFAEMGNAEKSRIIMVGDTLKKAGDSSQNSLVKDVGDTHLVLERPASTFPIQLLHSKTNDLEIINCMLCCIVQYINKSFNKSWLVLHVAFLVLICVTLFFLLSWFLAETGLVSVEHQMREMGLDVKAPVETDKKAE 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03883 277 SMART serkin_6 1 225 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g03883 277 SUPERFAMILY Protein kinase-like (PK-like) 73 148 IPR011009 -
Vifa4g03883 277 ProSiteProfiles Protein kinase domain profile. 1 216 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g03883 277 Pfam Protein kinase domain 74 149 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g03883 277 Gene3D Transferase(Phosphotransferase) domain 1 74 147 - -
Vifa4g03883 277 PANTHER CELL DIVISION PROTEIN KINASE 74 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03883 Vifa-Chr4 1239575484 1239578398 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03883 74 146 Core Cell Cycle Gene Families AT2G38620 89.041 1.85e-40 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-Pl Vifa4g03883 Pkinase 5.8e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03883 K07760 - gmx:100805119 145.206