Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03861 ATGGCTTCCTCCCCCTCAAACACCACTCTCCCATCTCTTCCAGATCCACCCATCGCCGTCCCCCTCGCTCTCCCAGCCCCACTCCCTCTCCCACCTTCCACTCGCCGCCTTCCTCCTCCTTGCTGGTCCCCCGACGAAACGCTAGCTCTCATCGATTCGTATCGCGACAAATGGTACTCCCTTGGCCGTGGAAACTTGAAGGCCACTCACTGGCAGGAAGTGGCTGACGCTGTTTCTCATCGTTGCCCCAATGCTTCTCCGGCGAAAACTCCGGTTCAGTGCCGGCATAAGATGGAGAAGCTGAGAAAGCGTTATCGCACTGAGATTCAACGTGCTCGCTCACTTCCTGTCACTCGATTCAACTCCGCTTGGGTTCACTTTAAACTCATGGATTCCATGGAGAAAGGTCCTTCTCAGGTTAAATCTGAAAACAACGATTCAGATAGCGCCGATGATGATGAAGAAGAAGATCAAGAACAAGATCTGTACATGGATATCAAAAACGGTCACGGATCTAACACTAGAAGCATCAATAAATTATATAGGAACGGTTTCGTTGGCGGTAGCGGTGGTGGTGGTGTGGGCGGTGTTGGCGGTAGCGGTGGTGGTGGTGTTGGCGGTGTTGGCGGAGGGTTCAGAATTAGGTTTCCGAATGCACAACCTGAATCAAGATTTCCTCCTGATCCGAAGTATAACCCTAACCTGCATCACAACTACGGGACTCCGACGCCGCCACCTCCGGTCACAAATAAGGGTTTAGGTAACAAAAGAGAAAGAGATCCATTTGGAGAGGTTGTGTCTGCCATCAAGGTATTGGGAGACGGGTTTGTGAGGATGGAGCAAATGAAGATGGAGATGGCGAGGGAGATTGAAGCTATGCGGATGGATATGGAAATGAAGCGCACTGAGATGATTCTCGAATCTCAGCGGCGAATTGTGGAGGCATTTGCCAAAGCTGTTTCCGATGACAATAACGGAAGTAACCACAAGATGAAGCCTGTTAATAAGAGAATTCCCTCACCACAACAACAACCATAA 1038 0.5039 MASSPSNTTLPSLPDPPIAVPLALPAPLPLPPSTRRLPPPCWSPDETLALIDSYRDKWYSLGRGNLKATHWQEVADAVSHRCPNASPAKTPVQCRHKMEKLRKRYRTEIQRARSLPVTRFNSAWVHFKLMDSMEKGPSQVKSENNDSDSADDDEEEDQEQDLYMDIKNGHGSNTRSINKLYRNGFVGGSGGGGVGGVGGSGGGGVGGVGGGFRIRFPNAQPESRFPPDPKYNPNLHHNYGTPTPPPPVTNKGLGNKRERDPFGEVVSAIKVLGDGFVRMEQMKMEMAREIEAMRMDMEMKRTEMILESQRRIVEAFAKAVSDDNNGSNHKMKPVNKRIPSPQQQP 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03861 345 MobiDBLite consensus disorder prediction 318 345 - -
Vifa4g03861 345 Coils Coil 95 115 - -
Vifa4g03861 345 SMART 118neu2 49 138 IPR006578 -
Vifa4g03861 345 Pfam Myb/SANT-like DNA-binding domain 40 133 IPR044822 -
Vifa4g03861 345 MobiDBLite consensus disorder prediction 135 159 - -
Vifa4g03861 345 FunFam Trihelix transcription factor ASIL2 42 107 - -
Vifa4g03861 345 ProSiteProfiles Myb-like domain profile. 42 102 IPR001005 -
Vifa4g03861 345 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 33 322 IPR044823 -
Vifa4g03861 345 Gene3D - 42 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03861 Vifa-Chr4 1233547265 1233548302 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03861 41 133 Trihelix Transcription Factor Family AT3G14180 36.559 6.54e-15 73.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vifa4g03861 Myb_DNA-bind_4 1.3e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03861 - - mtr:25494055 462.225