Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03813 ATGGCACTTGGTAGTGGTAGTTTATGCAAGCCTCAAGTTGCGCTGTTTCCCCATTCTGTAAATTCGAAGCAATCACAATCGAAAATCACATTTTCACCTCCAACAAAATTTCCAACCACTCTTTCACTCTCAATTTCTGCCTCCAACGTTCTTCGCAATGCGCCTTTTCCACTGTTTTGCTGCATAGCCGATTCCACCTCCTCCACCTCTTCTGTCGAATGTAATATGCCTTCTTCAACCAAAATCTTCATCAAAGGGCTTCCCCTCTCAACCTCTGAAGTGTATTTAGCCGAAGTGTTTTCGGTGTTTGGTGAAGTTACTAAAGTCAAGCTTTTGAAAGATAAAGAATCTGGACAGTCTCTAGGATTTGCATACATTTGGTTTTTCGATGAGGAGTCTGCACAGTCGGCTGCAAATGAGACGAATGGAAAGTTTTTTGATGGCAGGTTTATTTATGTTACAATTGCAAAGCCTGGATCATCAAAAAATTTGAAGAGGAGAAAACCCTACAAATTCTAA 519 0.4085 MALGSGSLCKPQVALFPHSVNSKQSQSKITFSPPTKFPTTLSLSISASNVLRNAPFPLFCCIADSTSSTSSVECNMPSSTKIFIKGLPLSTSEVYLAEVFSVFGEVTKVKLLKDKESGQSLGFAYIWFFDEESAQSAANETNGKFFDGRFIYVTIAKPGSSKNLKRRKPYKF 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03813 172 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 80 158 IPR000504 GO:0003723
Vifa4g03813 172 SMART rrm1_1 81 154 IPR000504 GO:0003723
Vifa4g03813 172 PANTHER RNA-BINDING MOTIF PROTEIN, X-LINKED 2 66 166 - -
Vifa4g03813 172 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 82 151 IPR000504 GO:0003723
Vifa4g03813 172 SUPERFAMILY RNA-binding domain, RBD 71 163 IPR035979 GO:0003676
Vifa4g03813 172 Gene3D - 19 169 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03813 Vifa-Chr4 1223570197 1223571586 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03813 36 158 Eukaryotic Initiation Factors Gene Family AT3G11400 31.200 2.26e-09 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03813 - - psat:127073405 272.707
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g03813 4 1223570197 1223571586 Vifa4g03813 4 1223570197 1223571586 ECH