Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03806 ATGGGTGGTTCATGGAGTAACAATAATAACAGAAACAGAAGAAGAAACAGTTACCATGAACACTACCCACCTCCTCCTCCAACCTACTATTATCAATACTCTTCTCAACCTCACCCTATCATGCCACAGCCACAGCCACAGCCTCCTCAAGGTTATTTTCCTCCTCACTCTCATCACTTCTACTCAAATCTCCCTCACCAACCTTCCTACGAAGCAGCAGCCACCACAACAACAAATACTCAACCGTTCGGAGTAGATTTGAATGTACATGTTGCTCAACCACCGTACGTTGACCATGAAACTGCAAAGAAGGTAAAGAATGATGTCAATTTGCATAAACATACTCTACAGCTCCACGTGGATCCCAACAATTCCGATCACCACTTGGTTTCCTTTGTTTTCGACGCTATTTATGATGGCAGAATTACAATCCTTTACTTAGCGAAAGAAGAAGAACATAAATGTAGGTTTATTCCTCTATTTCCCGAAGCGTTTGAGCCGATAACGTTCCCCTTCCAGAAAGGAGTTGGTCAGAAATTCTGCCAGCCTTCAGGAACAGGAATTGACTTAGGTTTCTTTGAGTTGGATCATCTTTCAAACCCTTCGCCCGAAGAAGATGTGTTTCCACTTGTGATATGCGCCCAAACAACACCTTTGGCAGATCACGAAACCCCCTCTAGTTCCTCTGTAGATGCATCCCCTCATATGCAAATAACTCAAGCTGTTTTGGAGAAAACCAATGGAACTGGTCCTTTTCAGGTTAAAGTAGTTAGGCAGATTCTGTGGATCGATCAAGTTCGTTATGAACTACGAGAGTTATATGGAATTGGTAACTCAGCAGCGCCTGATTTCGATCGTAATGATCCTGGAAAAGAGTGTGTGATATGCATGACTGAGCCCAAGGATACCGCTGTCTTACCTTGTCGGCACATGTGTATGTGCAGCGAGTGTGCAAAAGTGCTGCGTGTTCAATCAAATAGTTGCCCTATTTGCCGCCAACCTATCGAGCAACTTCTAGAGATCAAGATAAACAACAACAACGAATAA 1047 0.4346 MGGSWSNNNNRNRRRNSYHEHYPPPPPTYYYQYSSQPHPIMPQPQPQPPQGYFPPHSHHFYSNLPHQPSYEAAATTTTNTQPFGVDLNVHVAQPPYVDHETAKKVKNDVNLHKHTLQLHVDPNNSDHHLVSFVFDAIYDGRITILYLAKEEEHKCRFIPLFPEAFEPITFPFQKGVGQKFCQPSGTGIDLGFFELDHLSNPSPEEDVFPLVICAQTTPLADHETPSSSSVDASPHMQITQAVLEKTNGTGPFQVKVVRQILWIDQVRYELRELYGIGNSAAPDFDRNDPGKECVICMTEPKDTAVLPCRHMCMCSECAKVLRVQSNSCPICRQPIEQLLEIKINNNNE 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03806 348 SMART ring_2 293 331 IPR001841 -
Vifa4g03806 348 SUPERFAMILY RING/U-box 292 338 - -
Vifa4g03806 348 PANTHER MAHOGUNIN 1 344 IPR045194 GO:0061630
Vifa4g03806 348 Pfam Zinc finger, C3HC4 type (RING finger) 291 337 - -
Vifa4g03806 348 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 279 342 IPR013083 -
Vifa4g03806 348 MobiDBLite consensus disorder prediction 39 53 - -
Vifa4g03806 348 CDD mRING-HC-C3HC5_MGRN1-like 291 332 IPR045195 -
Vifa4g03806 348 ProSiteProfiles Zinc finger RING-type profile. 293 332 IPR001841 -
Vifa4g03806 348 MobiDBLite consensus disorder prediction 1 59 - -
Vifa4g03806 348 FunFam probable E3 ubiquitin-protein ligase LOG2 277 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03806 Vifa-Chr4 1219640253 1219641487 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03806 96 348 C3H Transcription Factor Family AT3G06140 62.205 1.08e-103 307