Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03800 ATGGCGGCAACGTCAGAAGCTATGAACAAATTCGATGAATCGATGAAGAAACAAATAGCAGTAATTTTGAAGGTTGTGCTTTTGAATAAATCCCTAAAAGAGGATAATATTCCATGCGAAATTGATGAGGGTCTTTTTTTGGGTTCGATTGGTTCTGCGGGGAACAAGGTTGCTTTGAAGAACGTTAATGTTACACATATTTTGACTGTGGCTGGGAAACTTGCACCTGCTCATCCTGGAGATTTTGTTTATAAAGTTATAGATGTTGCTGACAAAGAGGATACCAACTTAAAACAATACTTCAACGAGTGTTTTGAATTTATTGACGAAGCCAAAAAAAAGGGTGGACATGTTTTGGTTCACTGTTATGCTGGAAAATCAAGGAGTGTGACTATCATTGTGGCATATCTGATGAAATCTCGTGGAATGGGCTTATCTGAAGCTCTGCAACATGTTAAGAACAAAAGACCAAAAGCAGCTCCTAATCGTGGTTTCATTCGGCAACTGGAAGACTTTGAGAAATCTCTTCAAGGTGAAAACTGCACTAATTAA 552 0.3822 MAATSEAMNKFDESMKKQIAVILKVVLLNKSLKEDNIPCEIDEGLFLGSIGSAGNKVALKNVNVTHILTVAGKLAPAHPGDFVYKVIDVADKEDTNLKQYFNECFEFIDEAKKKGGHVLVHCYAGKSRSVTIIVAYLMKSRGMGLSEALQHVKNKRPKAAPNRGFIRQLEDFEKSLQGENCTN 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03800 183 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 99 157 IPR000387 GO:0016311|GO:0016791
Vifa4g03800 183 FunFam Dual specificity phosphatase 12 39 182 - -
Vifa4g03800 183 Gene3D Protein tyrosine phosphatase superfamily 30 182 IPR029021 -
Vifa4g03800 183 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE 32 177 - -
Vifa4g03800 183 Pfam Dual specificity phosphatase, catalytic domain 45 174 IPR000340 GO:0008138|GO:0016311
Vifa4g03800 183 CDD DSP 38 171 - -
Vifa4g03800 183 SMART dsp_5 37 175 IPR020422 GO:0006470|GO:0008138
Vifa4g03800 183 ProSiteProfiles Dual specificity protein phosphatase domain profile. 37 178 IPR020422 GO:0006470|GO:0008138
Vifa4g03800 183 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 35 180 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03800 Vifa-Chr4 1217084333 1217086728 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03800 40 178 Protein tyrosine phosphatase (PTP) family AT3G06110 59.712 3.43e-60 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03800 - - lang:109352945 268.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g03800 4 1217084333 1217086728 Vifa4g03800 4 1217084333 1217086728 ECH