Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03797 ATGTTTCCAACCAATTTTTCTTTCTTCTTTGTCTTCCTCTCTGTGACATCTCACTCTTTTGCTGCAGCCACCACTTCTTGGGTGAAGGCTGGTTATTACTATTCCGGCAGTGAAATTTCAGCTTCAGAAATTAAATCAACACTTTTCACACACCTCTTATGTGCTTTTGCTTTTATAAACTCCACAAACTATAATATCTTTATAAACTCTTCTGAAGAACACAAATTCTCCACCTTCACCAACACAGTAAAGCTTCAAAACCCATCTGTTATAACTCTTCTTTCAATCTACACCGGAAGAGAAAACTCTTCGGCTTTCAACTCAATCATAAACCAATCTTCTTACAGAAAATCTTTCATTGATTCTTCCATCAAAACAGCAAGGAAATATGAGTTTCAAGGCATAGACCTTTGTGGAGTCTCACCAAAGCAAGGTAAAGAGCTTGCGAATTTCGCAACCCTTTTGAAAGAGTGGCGAATCGCGATAACTTCTGAGGCAAGAAACACCAAAAAGACAGAACTAGTGTTGGTGATGGCAGGTTATTATCTCAAAGCTTCAGATTCATTTAGTTACCCTTTTGAATCAATGCAGAAGAATCTGGACTGGGTTCATTTTGTTGCATATGATTACTATCTTCCCAAAAAGGATATTGTCACAGGTTTTCATGCAGCGTTATATGGTTCATCTGGTTGGGAAAATACTGATTCTGGTATCCAAGAGTGGAGAAAGAGAGGATTTTCTTCAAACAAGCTTGTAATTGGTTTGCCTTATCATGGATATGCATGGACACTTGTGAAACAAGGTGAAGAGGGTGTTGGAAAACCAGCTTTTGGTCCTGCTATTACTATGGATGGTTCTATGTCTTATAAGTTGATAAAAAGTTACATTAGAAGCTTTGGAGGTGGAGTAGTTTCAAGTTTTAATGATACTTTTGTGGTCAATCATTTCACTGTTGCTTCCACTACATGGGTTAATTTTGATGATGTGGAAGCTATTAAAGAAAAAGTTTCTTATGTGAAGAAGAATGGATTACTTGGTTACAATGTTTTCCAAGTTGGGAATGATGAAAACTGGGTCCTTTCAAAGGCAGCTCAAGAAGTAGATGAAGACCATCATAACAGAAGGTTGCTAATAATTGTTCTGCTTACAACTTTGACTGCTGCACTTCTCTTGGGAATAGTATTTTGCTACTACTACCAAGGAACAGTGGCCATTCTTACAAGAATGATATACAAATTGAGTATATATTTATCAGCAGCTGAAGAAGATCTTAGTGGAAATGCTTCTGATTTGATAGTATTTGGTTATCTCACAATTAAAGTAGCAACAGATAACTTCTCAAAAGAAAATAAGCTCGGAGAAGGTGGATTTGGTGCAGTGTATAAGGGAAAATTACGAAAGGGACAGGAAATAGCCGTCAAAAGACTCTCAGAAAACTCGAATCAAGGACTTGAAGAGTTCAAAAATGAGATCACACTCACAGCAAGATTACAACATGTTAATTTAGTTAGGCTTTTGGGTTACTGCACAAAAAAGAATGAGAAGCTTCTCATATATGAATACCTCCCAAATAAAAGCTTAGATCATTTTCTCTTTGATCCAAGGAAATCAATTCTTCTAGATTGGAGGAAGCGTGTGAATATCATTGAAGGAATTACTCAAGGCCTTCTTTATCTCCAAGAGTACTCAAATTTTACTATAATCCACCGAGATCTTAAAGCTAGTAATGTTTTGTTAGACCATGAGATGAATGCTAAGATATCAGATTTTGGTATGGCTAGAATTTTCGGGAAGTACGAACATGAAGCAAACACAAGCAGGATTGTGGGGACATACGGGTATGTACCTCCCGAGTATGTAAGAAAAGGCATATACTCACCCAAATACGATGTTTATAGTTTTGGAGTTCTTCTCTTGCAAATTATAAGTGGAAAGAGGACTTCACAATATTACGGTCCGCATGAAAATATGAATCTTTTGGAATATGCATATGAGCTGTGGATGGAAGGAACAATTTTGGAATTTTTGGACCCTTCATTGGATGATTCAACATCTCATTGTAAAATCATGAGATGCATGCAGGTAGCTCTTTTGTGTGTTCAAGAGAATTCAGCAGATAGACCTTCCATGCTAGAAGTTGATTCACTGCTCAAAAATGAAGGTACACCAGTTGGTACTCCCAACATGCCAGCTTTTTCGATGAAAATACACGGAGATGATAAAGGAGATACATCTAACTCAAGGTTGAAATTTTCTTCCATCAATGATGTTACCATTTCTGAGATGGTACCAAGATAA 2298 0.3699 MFPTNFSFFFVFLSVTSHSFAAATTSWVKAGYYYSGSEISASEIKSTLFTHLLCAFAFINSTNYNIFINSSEEHKFSTFTNTVKLQNPSVITLLSIYTGRENSSAFNSIINQSSYRKSFIDSSIKTARKYEFQGIDLCGVSPKQGKELANFATLLKEWRIAITSEARNTKKTELVLVMAGYYLKASDSFSYPFESMQKNLDWVHFVAYDYYLPKKDIVTGFHAALYGSSGWENTDSGIQEWRKRGFSSNKLVIGLPYHGYAWTLVKQGEEGVGKPAFGPAITMDGSMSYKLIKSYIRSFGGGVVSSFNDTFVVNHFTVASTTWVNFDDVEAIKEKVSYVKKNGLLGYNVFQVGNDENWVLSKAAQEVDEDHHNRRLLIIVLLTTLTAALLLGIVFCYYYQGTVAILTRMIYKLSIYLSAAEEDLSGNASDLIVFGYLTIKVATDNFSKENKLGEGGFGAVYKGKLRKGQEIAVKRLSENSNQGLEEFKNEITLTARLQHVNLVRLLGYCTKKNEKLLIYEYLPNKSLDHFLFDPRKSILLDWRKRVNIIEGITQGLLYLQEYSNFTIIHRDLKASNVLLDHEMNAKISDFGMARIFGKYEHEANTSRIVGTYGYVPPEYVRKGIYSPKYDVYSFGVLLLQIISGKRTSQYYGPHENMNLLEYAYELWMEGTILEFLDPSLDDSTSHCKIMRCMQVALLCVQENSADRPSMLEVDSLLKNEGTPVGTPNMPAFSMKIHGDDKGDTSNSRLKFSSINDVTISEMVPR 765
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03797 765 CDD STKc_IRAK 452 719 - -
Vifa4g03797 765 SUPERFAMILY (Trans)glycosidases 30 356 IPR017853 -
Vifa4g03797 765 FunFam Uncharacterized protein 422 521 - -
Vifa4g03797 765 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 27 371 IPR001223 GO:0005975
Vifa4g03797 765 Pfam Protein kinase domain 446 710 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g03797 765 SUPERFAMILY Protein kinase-like (PK-like) 430 733 IPR011009 -
Vifa4g03797 765 Gene3D Glycosidases 42 356 - -
Vifa4g03797 765 SMART 2g34 27 355 IPR011583 GO:0008061
Vifa4g03797 765 FunFam Uncharacterized protein 522 727 - -
Vifa4g03797 765 ProSitePatterns Protein kinases ATP-binding region signature. 452 474 IPR017441 GO:0005524
Vifa4g03797 765 Gene3D - 257 326 IPR029070 -
Vifa4g03797 765 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 82 762 - -
Vifa4g03797 765 SMART serkin_6 446 717 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g03797 765 ProSitePatterns Serine/Threonine protein kinases active-site signature. 567 579 IPR008271 GO:0004672|GO:0006468
Vifa4g03797 765 Pfam Glycosyl hydrolases family 18 32 355 IPR001223 GO:0005975
Vifa4g03797 765 Gene3D Transferase(Phosphotransferase) domain 1 522 722 - -
Vifa4g03797 765 ProSiteProfiles Protein kinase domain profile. 446 717 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g03797 765 Gene3D Phosphorylase Kinase; domain 1 421 521 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vifa4g03797 Vifa-Chr4 1214843211 1214846365 Dispersed/Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03797 434 765 Receptor kinase-like Gene Family AT4G11530 52.522 7.04e-116 363
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vifa4g03797 Glyco_hydro_18 1.7e-52 CL0058
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03797 - - tpra:123922687 1298.11