LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa4g03796	ATGTTTCCAACCAATTTTTCTTTCTTCTTTGTCTTCCTCTCTGTGACATCTCACTCTTTTGCTGCAGCCACCACTTCTTGGGTGAAGGCTGGTTATTACTATTCCGGCAGTGAAATTTCAGCTTCAGAAATTAAATCAACACTTTTCACACACCTCTTATGTGCTTTTGCTTTTATAAACTCCACAAACTATAATATCTTTATAAACTCTTCTGAAGAACACAAATTCTCCACCTTCACCAACACAGTAAAGCTTCAAAACCCATCTGTTATAACTCTTCTTTCAATCTACACCGGAAGAGAAAACTCTTCGGCTTTCAACTCAATCATAAACCAATCTTCTTACAGAAAATCTTTCATTGATTCTTCCATCAAAACAGCAAGGAAATATGAGTTTCAAGGCATAGACCTTTGTGGAGTCTCACCAAAGCAAGGTAAAGAGCTTGCGAATTTCGCAACCCTTTTGAAAGAGTGGCGAATCGCGATAACTTCTGAGGCAAGAAACACCAAAAAGACAGAACTAGTGTTGGTGATGGCAGGTTATTATCTCAAAGCTTCAGATTCATTTAGTTACCCTTTTGAATCAATGCAGAAGAATCTGGACTGGGTTCATTTTGTTGCATATGATTACTATCTTCCCAAAAAGGATATTGTCACAGGTTTTCATGCAGCGTTATATGGTTCATCTGGTTGGGAAAATACTGATTCTGGTATCCAAGAGTGGAGAAAGAGAGGATTTTCTTCAAACAAGCTTGTAATTGGTTTGCCTTATCATGGATATGCATGGACACTTGTGAAACAAGGTGAAGAGGGTGTTGGAAAACCAGCTTTTGGTCCTGCTATTACTATGGATGGTTCTATGTCTTATAAGTTGATAAAAAGTTACATTAGAAGCTTTGGAGGTGGAGTAGTTTCAAGTTTTAATGATACTTTTGTGGTCAATCATTTCACTGTTGCTTCCACTACATGGGTTAATTTTGATGATGTGGAAGCTATTAAAGAAAAAGTTTCTTATGTGAAGAAGAATGGATTACTTGGTTACAATGTTTTCCAAGTTGGGAATGATGAAAACTGGGTCCTTTCAAAGGCAGCTCAAGAAGTAGATGAAGACCATCATAACAGAAGGTTGCTAATAATTGTTCTGCTTACAACTTTGACTGCTGCACTTCTCTTGGGAATAGTATTTTGCTACTACTACCAAGCAGGAACAGTGGCCATTCTTACAAGAATGATATACAAATTGAGTATATATTTATCAGCAGCTGAAGAAGATCTTAGTGGAAATGCTTCTGATTTGATAGTATTTGGTTATCTCACAATTAAAGTAGCAACAGATAACTTCTCAAAAGAAAATAAGCTCGGAGAAGGTGGATTTGGTGCAGTGTATAAGGGAAAATTACGAAAGGGACAGGAAATAGCCGTCAAAAGACTCTCAGAAAACTCGAATCAAGGACTTGAAGAGTTCAAAAATGAGATCACACTCACAGCAAGATTACAACATGTTAATTTAGTTAGGCTTTTGGGTTACTGCACAAAAAAGAATGAGAAGCTTCTCATATATGAATACCTCCCAAATAAAAGCTTAGATCATTTTCTCTTTGATCCAAGGAAATCAATTCTTCTAGATTGGAGGAAGCGTGTGAATATCATTGAAGGAATTACTCAAGGCCTTCTTTATCTCCAAGAGTACTCAAATTTTACTATAATCCACCGAGATCTTAAAGCTAGTAATGTTTTGTTAGACCATGAGATGAATGCTAAGATATCAGATTTTGGTATGGCTAGAATTTTCGGGAAGTACGAACATGAAGCAAACACAAGCAGGATTGTGGGGACATACGGGTATGTACCTCCCGAGTATGTAAGAAAAGGCATATACTCACCCAAATACGATGTTTATAGTTTTGGAGTTCTTCTCTTGCAAATTATAAGTGGAAAGAGGACTTCACAATATTACGGTCCGCATGAAAATATGAATCTTTTGGAATATGCATATGAGCTGTGGATGGAAGGAACAATTTTGGAATTTTTGGACCCTTCATTGGATGATTCAACATCTCATTGTAAAATCATGAGATGCATGCAGGTAGCTCTTTTGTGTGTTCAAGAGAATTCAGCAGATAGACCTTCCATGCTAGAAGTTGATTCACTGCTCAAAAATGAAGGTACACCAGTTGGTACTCCCAACATGCCAGCTTTTTCGATGAAAATACACGGAGATGATAAAGGAGATACATCTAACTCAAGGTTGAAATTTTCTTCCATCAATGATGTTACCATTTCTGAGATGGTACCAAGATAA	2301	0.3703	MFPTNFSFFFVFLSVTSHSFAAATTSWVKAGYYYSGSEISASEIKSTLFTHLLCAFAFINSTNYNIFINSSEEHKFSTFTNTVKLQNPSVITLLSIYTGRENSSAFNSIINQSSYRKSFIDSSIKTARKYEFQGIDLCGVSPKQGKELANFATLLKEWRIAITSEARNTKKTELVLVMAGYYLKASDSFSYPFESMQKNLDWVHFVAYDYYLPKKDIVTGFHAALYGSSGWENTDSGIQEWRKRGFSSNKLVIGLPYHGYAWTLVKQGEEGVGKPAFGPAITMDGSMSYKLIKSYIRSFGGGVVSSFNDTFVVNHFTVASTTWVNFDDVEAIKEKVSYVKKNGLLGYNVFQVGNDENWVLSKAAQEVDEDHHNRRLLIIVLLTTLTAALLLGIVFCYYYQAGTVAILTRMIYKLSIYLSAAEEDLSGNASDLIVFGYLTIKVATDNFSKENKLGEGGFGAVYKGKLRKGQEIAVKRLSENSNQGLEEFKNEITLTARLQHVNLVRLLGYCTKKNEKLLIYEYLPNKSLDHFLFDPRKSILLDWRKRVNIIEGITQGLLYLQEYSNFTIIHRDLKASNVLLDHEMNAKISDFGMARIFGKYEHEANTSRIVGTYGYVPPEYVRKGIYSPKYDVYSFGVLLLQIISGKRTSQYYGPHENMNLLEYAYELWMEGTILEFLDPSLDDSTSHCKIMRCMQVALLCVQENSADRPSMLEVDSLLKNEGTPVGTPNMPAFSMKIHGDDKGDTSNSRLKFSSINDVTISEMVPR	766

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa4g03796	766	SUPERFAMILY	(Trans)glycosidases	30	356	IPR017853	-
	Vifa4g03796	766	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	82	763	-	-
	Vifa4g03796	766	ProSiteProfiles	Glycosyl hydrolases family 18 (GH18) domain profile.	27	371	IPR001223	GO:0005975
	Vifa4g03796	766	Gene3D	Glycosidases	42	356	-	-
	Vifa4g03796	766	SMART	2g34	27	355	IPR011583	GO:0008061
	Vifa4g03796	766	Pfam	Protein kinase domain	447	711	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa4g03796	766	Gene3D	-	257	326	IPR029070	-
	Vifa4g03796	766	Gene3D	Phosphorylase Kinase; domain 1	422	522	-	-
	Vifa4g03796	766	SMART	serkin_6	447	718	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa4g03796	766	FunFam	Uncharacterized protein	423	522	-	-
	Vifa4g03796	766	ProSiteProfiles	Protein kinase domain profile.	447	718	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa4g03796	766	Pfam	Glycosyl hydrolases family 18	32	355	IPR001223	GO:0005975
	Vifa4g03796	766	Gene3D	Transferase(Phosphotransferase) domain 1	523	723	-	-
	Vifa4g03796	766	ProSitePatterns	Protein kinases ATP-binding region signature.	453	475	IPR017441	GO:0005524
	Vifa4g03796	766	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	568	580	IPR008271	GO:0004672\|GO:0006468
	Vifa4g03796	766	CDD	STKc_IRAK	453	720	-	-
	Vifa4g03796	766	SUPERFAMILY	Protein kinase-like (PK-like)	431	734	IPR011009	-
	Vifa4g03796	766	FunFam	Uncharacterized protein	523	728	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa4g03796	Vifa-Chr4	1214843211	1214846365	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa4g03796	435	766	Receptor kinase-like Gene Family	AT4G11530	52.522	7.22e-116	363

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Vifa4g03796		Glyco_hydro_18	1.7e-52	CL0058

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa4g03796	-		-	tpra:123922687	1293.49