Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03794 ATGTTTTCAAAACTTTTAGCTTTCTTCCTTAGTGTCCTTGTCTTCTTCCCTCTCACATTTGACTCATTTGCAGATACAACTTCCTGGGTTAGAGCAGGTTATTACCATACCGAAAGTGAAATTTCAGCTTCAGAAATTAAATCAACACTTTTCACACATCTCTTATGTGCTTTTGCTTTTATAAACTCCACGAACTACAACGTCTTTATTAACTCTTCTCAGGAACTCAAGTTCTCATCCTTCACCAACTCAGTAAAGTTTCAAAACCCATATGTTACATCTCTTCTATCAATCAATGGTGGAAGAGAAAACTCTTCACTTCTTAGCTCAATGATAAACCAATCTTCCTACAGAAAATCATTCATTGACTCTTCTATCAAAACAGCAAGAAAATATGGATTTCAAGGCATAGACTTTCGTGGGGCCAGGCCAAAGCTAGGTAAAGAGCTTGCAAATTTTGCAACCCTTTTGAAAGAGTGGCGAATCGCAATAACTTCTGAAGCAAGAAACATTAAAAAACCAGATTTAGTTTTGGTGATGGCGGGTTATTATCTCAAAGCTTCAGATTCCTTTAGTTACCCTTTTGAATCTATGCAGAAAAATTTAGATTGGGTTCATTTTGTTGCATATGATTACCATCTTCCTGAAAAGGAGAGTGTCACAGGTTTTCATGCAGCTTTATATGGTTCATCTGGTTGGGAAAATACTGATTCTGGTATCAAAGAGTGGAGAAAGAGAGGGTTTTCTTCAAACAAACTTGTAATTGGTTTACCTTATCATGGATATGCATGGAGACTTATGGAACAAGGTGAAGGGGGTGTTGGAAAACCAGCTTCTGGTCCTGCTATTACTAAGGATGGTTCTATGGGTTATAAGTGGATAAAAAGTTACATTAAAAGCTTTGGAGATGGACTAGTTTCAAGCTATAATGATACTTTTATGGTGAATTATTTCACTATTGCTTCCATTGCTTGGGTTAACTTTGATGATGTGGAGGCTATTAAAGAAAAAGTTTCTTATGCAAAGAAAAATGGATTACTTGGTTACATTGTGTTCCAAGTTGGGAATGATGACAATTGGGTCCTTTCAACGGCAGCTCAAGAAGTAGATGAAGACCATCATAACAGAAGGTTGCTAATAATTGTTCTGCTTACAATTTTGGCTACTGCACTTCTCTTGGGAATAGTATTTTGCTGCTACTACCAAGGAACAGTGGCCATTCTTACAAGAATGATATACAAACTGAGTATATATTTATCAGCAGCTGAAGAAGATCTTAGTGGAAATGCTTCTGATTTGATAGTATTTGGTTATCTCACAATTAAAGTAGCAACAGATAACTTCTCAACAGAAAATAAGCTGGGAGAAGGTGGATTTGGTGCTGTGTATAAGGGAAAATTAGGAAAGGGACAGGAAATAGCCGTGAAAAGACTCTCAGAAACTTCAAATCAAGGACTTGAAGAGTTCAAAAATGAGATCACACTCACAGCAAGATTACAACATGTTAATTTAGTTAGACTTTTGGGTTACTGCACAAAAAAGAATGAGAAGCTTCTCATCTATGAATACCTCCCAAATAAAAGCTTAGATCATTTTCTCTTTGATCCAAGGAAATCAATTCTTCTAGATTGGAGGAAGCGTGTGAATATCATTGAAGGAATTACTCAAGGCCTTCTTTATCTCCAAAAAATTTTTGGAAAGAATGAACTAGAAGCAAATACAACTAGGATCGTCGGAACATATGGATACGTACCTCCCGAGTATGTCAGAAAAGGCATATACTCACTCAAGTATGATGTTTATAGTTTTGGAGTCCTTCTCTTGCAAATCATAAGTGGGAAGAGATCTTCACATTATTACGGTCCAGATGAAAATATGAACCTTTTAGAATACGCATATGAGCTGTGGATGGAAGGAAGAGGCGTGGAGTTTTTGGACCCTACATTGGATGATTCAACATCTGATTGTAAAATCATGAGATGCATGCATATAGGTCTTTTGTGCGTTCAAGATAATTCGGTAGATAGACCTTCTATGTTAGAAGTTGATTCACTACTCAGGAATGAAGGCACACTCGTCGATACTCCCAAAATGCCAGCTTTTTCGATGAAAAAACACGGATCTAACTCAAGATTAAAATTTCCTTCAATCAATGATGTTACAATTTCAGAGATGGTAGCAAGATAA 2187 0.3658 MFSKLLAFFLSVLVFFPLTFDSFADTTSWVRAGYYHTESEISASEIKSTLFTHLLCAFAFINSTNYNVFINSSQELKFSSFTNSVKFQNPYVTSLLSINGGRENSSLLSSMINQSSYRKSFIDSSIKTARKYGFQGIDFRGARPKLGKELANFATLLKEWRIAITSEARNIKKPDLVLVMAGYYLKASDSFSYPFESMQKNLDWVHFVAYDYHLPEKESVTGFHAALYGSSGWENTDSGIKEWRKRGFSSNKLVIGLPYHGYAWRLMEQGEGGVGKPASGPAITKDGSMGYKWIKSYIKSFGDGLVSSYNDTFMVNYFTIASIAWVNFDDVEAIKEKVSYAKKNGLLGYIVFQVGNDDNWVLSTAAQEVDEDHHNRRLLIIVLLTILATALLLGIVFCCYYQGTVAILTRMIYKLSIYLSAAEEDLSGNASDLIVFGYLTIKVATDNFSTENKLGEGGFGAVYKGKLGKGQEIAVKRLSETSNQGLEEFKNEITLTARLQHVNLVRLLGYCTKKNEKLLIYEYLPNKSLDHFLFDPRKSILLDWRKRVNIIEGITQGLLYLQKIFGKNELEANTTRIVGTYGYVPPEYVRKGIYSLKYDVYSFGVLLLQIISGKRSSHYYGPDENMNLLEYAYELWMEGRGVEFLDPTLDDSTSDCKIMRCMHIGLLCVQDNSVDRPSMLEVDSLLRNEGTLVDTPKMPAFSMKKHGSNSRLKFPSINDVTISEMVAR 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03794 728 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 307 563 - -
Vifa4g03794 728 SUPERFAMILY (Trans)glycosidases 32 358 IPR017853 -
Vifa4g03794 728 SUPERFAMILY Protein kinase-like (PK-like) 432 703 IPR011009 -
Vifa4g03794 728 Gene3D - 259 328 IPR029070 -
Vifa4g03794 728 ProSitePatterns Protein kinases ATP-binding region signature. 454 476 IPR017441 GO:0005524
Vifa4g03794 728 Pfam Protein tyrosine and serine/threonine kinase 450 563 IPR001245 GO:0004672|GO:0006468
Vifa4g03794 728 Gene3D Transferase(Phosphotransferase) domain 1 563 694 - -
Vifa4g03794 728 Gene3D Glycosidases 44 359 - -
Vifa4g03794 728 Pfam Glycosyl hydrolases family 18 32 357 IPR001223 GO:0005975
Vifa4g03794 728 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 29 373 IPR001223 GO:0005975
Vifa4g03794 728 FunFam Uncharacterized protein 424 523 - -
Vifa4g03794 728 ProSiteProfiles Protein kinase domain profile. 448 686 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g03794 728 SMART 2g34 29 357 IPR011583 GO:0008061
Vifa4g03794 728 Gene3D Phosphorylase Kinase; domain 1 423 523 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03794 Vifa-Chr4 1214680965 1214684069 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03794 436 728 Receptor kinase-like Gene Family AT4G11530 45.104 3.93e-91 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vifa4g03794 Glyco_hydro_18 2.3e-51 CL0058
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03794 - - psat:127073424 1140.95