Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03793 ATGTTTTCAAAACTTTTAGCTTTCTTCCTTAGTGTCCTTGTCTTCTTCCCTCTCACATTTGACTCATTTGCAGATACAACTTCCTGGGTTAGAGCAGGTTATTACCATACCGAAAGTGAAATTTCAGCTTCAGAAATTAAATCAACACTTTTCACACATCTCTTATGTGCTTTTGCTTTTATAAACTCCACGAACTACAACGTCTTTATTAACTCTTCTCAGGAACTCAAGTTCTCATCCTTCACCAACTCAGTAAAGTTTCAAAACCCATATGTTACATCTCTTCTATCAATCAATGGTGGAAGAGAAAACTCTTCACTTCTTAGCTCAATGATAAACCAATCTTCCTACAGAAAATCATTCATTGACTCTTCTATCAAAACAGCAAGAAAATATGGATTTCAAGGCATAGACTTTCGTGGGGCCAGGCCAAAGCTAGGTAAAGAGCTTGCAAATTTTGCAACCCTTTTGAAAGAGTGGCGAATCGCAATAACTTCTGAAGCAAGAAACATTAAAAAACCAGATTTAGTTTTGGTGATGGCGGGTTATTATCTCAAAGCTTCAGATTCCTTTAGTTACCCTTTTGAATCTATGCAGAAAAATTTAGATTGGGTTCATTTTGTTGCATATGATTACCATCTTCCTGAAAAGGAGAGTGTCACAGGTTTTCATGCAGCTTTATATGGTTCATCTGGTTGGGAAAATACTGATTCTGGTATCAAAGAGTGGAGAAAGAGAGGGTTTTCTTCAAACAAACTTGTAATTGGTTTACCTTATCATGGATATGCATGGAGACTTATGGAACAAGGTGAAGGGGGTGTTGGAAAACCAGCTTCTGGTCCTGCTATTACTAAGGATGGTTCTATGGGTTATAAGTGGATAAAAAGTTACATTAAAAGCTTTGGAGATGGACTAGTTTCAAGCTATAATGATACTTTTATGGTGAATTATTTCACTATTGCTTCCATTGCTTGGGTTAACTTTGATGATGTGGAGGCTATTAAAGAAAAAGTTTCTTATGCAAAGAAAAATGGATTACTTGGTTACATTGTGTTCCAAGTTGGGAATGATGACAATTGGGTCCTTTCAACGGCAGCTCAAGAAGTAGATGAAGACCATCATAACAGAAGGTTGCTAATAATTGTTCTGCTTACAATTTTGGCTACTGCACTTCTCTTGGGAATAGTATTTTGCTGCTACTACCAAGCAGGAACAGTGGCCATTCTTACAAGAATGATATACAAACTGAGTATATATTTATCAGCAGCTGAAGAAGATCTTAGTGGAAATGCTTCTGATTTGATAGTATTTGGTTATCTCACAATTAAAGTAGCAACAGATAACTTCTCAACAGAAAATAAGCTGGGAGAAGGTGGATTTGGTGCTGTGTATAAGGGAAAATTAGGAAAGGGACAGGAAATAGCCGTGAAAAGACTCTCAGAAACTTCAAATCAAGGACTTGAAGAGTTCAAAAATGAGATCACACTCACAGCAAGATTACAACATGTTAATTTAGTTAGACTTTTGGGTTACTGCACAAAAAAGAATGAGAAGCTTCTCATCTATGAATACCTCCCAAATAAAAGCTTAGATCATTTTCTCTTTGATCCAAGGAAATCAATTCTTCTAGATTGGAGGAAGCGTGTGAATATCATTGAAGGAATTACTCAAGGCCTTCTTTATCTCCAAAAAATTTTTGGAAAGAATGAACTAGAAGCAAATACAACTAGGATCGTCGGAACATATGGATACGTACCTCCCGAGTATGTCAGAAAAGGCATATACTCACTCAAGTATGATGTTTATAGTTTTGGAGTCCTTCTCTTGCAAATCATAAGTGGGAAGAGATCTTCACATTATTACGGTCCAGATGAAAATATGAACCTTTTAGAATACGCATATGAGCTGTGGATGGAAGGAAGAGGCGTGGAGTTTTTGGACCCTACATTGGATGATTCAACATCTGATTGTAAAATCATGAGATGCATGCATATAGGTCTTTTGTGCGTTCAAGATAATTCGGTAGATAGACCTTCTATGTTAGAAGTTGATTCACTACTCAGGAATGAAGGCACACTCGTCGATACTCCCAAAATGCCAGCTTTTTCGATGAAAAAACACGGATCTAACTCAAGATTAAAATTTCCTTCAATCAATGATGTTACAATTTCAGAGATGGTAGCAAGATAA 2190 0.3662 MFSKLLAFFLSVLVFFPLTFDSFADTTSWVRAGYYHTESEISASEIKSTLFTHLLCAFAFINSTNYNVFINSSQELKFSSFTNSVKFQNPYVTSLLSINGGRENSSLLSSMINQSSYRKSFIDSSIKTARKYGFQGIDFRGARPKLGKELANFATLLKEWRIAITSEARNIKKPDLVLVMAGYYLKASDSFSYPFESMQKNLDWVHFVAYDYHLPEKESVTGFHAALYGSSGWENTDSGIKEWRKRGFSSNKLVIGLPYHGYAWRLMEQGEGGVGKPASGPAITKDGSMGYKWIKSYIKSFGDGLVSSYNDTFMVNYFTIASIAWVNFDDVEAIKEKVSYAKKNGLLGYIVFQVGNDDNWVLSTAAQEVDEDHHNRRLLIIVLLTILATALLLGIVFCCYYQAGTVAILTRMIYKLSIYLSAAEEDLSGNASDLIVFGYLTIKVATDNFSTENKLGEGGFGAVYKGKLGKGQEIAVKRLSETSNQGLEEFKNEITLTARLQHVNLVRLLGYCTKKNEKLLIYEYLPNKSLDHFLFDPRKSILLDWRKRVNIIEGITQGLLYLQKIFGKNELEANTTRIVGTYGYVPPEYVRKGIYSLKYDVYSFGVLLLQIISGKRSSHYYGPDENMNLLEYAYELWMEGRGVEFLDPTLDDSTSDCKIMRCMHIGLLCVQDNSVDRPSMLEVDSLLRNEGTLVDTPKMPAFSMKKHGSNSRLKFPSINDVTISEMVAR 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03793 729 Gene3D Phosphorylase Kinase; domain 1 424 524 - -
Vifa4g03793 729 SUPERFAMILY (Trans)glycosidases 32 358 IPR017853 -
Vifa4g03793 729 Gene3D Glycosidases 44 359 - -
Vifa4g03793 729 Pfam Protein tyrosine and serine/threonine kinase 451 564 IPR001245 GO:0004672|GO:0006468
Vifa4g03793 729 Pfam Glycosyl hydrolases family 18 32 357 IPR001223 GO:0005975
Vifa4g03793 729 Gene3D Transferase(Phosphotransferase) domain 1 564 695 - -
Vifa4g03793 729 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 29 373 IPR001223 GO:0005975
Vifa4g03793 729 ProSiteProfiles Protein kinase domain profile. 449 687 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g03793 729 ProSitePatterns Protein kinases ATP-binding region signature. 455 477 IPR017441 GO:0005524
Vifa4g03793 729 FunFam Uncharacterized protein 425 524 - -
Vifa4g03793 729 SMART 2g34 29 357 IPR011583 GO:0008061
Vifa4g03793 729 SUPERFAMILY Protein kinase-like (PK-like) 433 704 IPR011009 -
Vifa4g03793 729 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 307 564 - -
Vifa4g03793 729 Gene3D - 259 328 IPR029070 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03793 Vifa-Chr4 1214680965 1214684069 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03793 437 729 Receptor kinase-like Gene Family AT4G11530 45.104 3.74e-91 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vifa4g03793 Glyco_hydro_18 2.3e-51 CL0058
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03793 - - psat:127073424 1142.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g03793 4 1214680965 1214684069 Vifa4g03793 4 1214680965 1214684069 ECH