Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03788 ATGTCTAGCCATGATGTCGAAAATATCCAAGAACTTCAGTTATTTACAATACCACAACTGCAAGTCCAAACACCGAATATTAATACTACCATAAACAACAACAACCCTGAACCAACCACTACTATTGTCCGCCGTCCTCGAGGTCGTCCAATTGGCTCTAAGAATAAGCCTAAGACACCTATCGTAGTAACATATGAAAACCCTAATGCATTATGTTCTCATGTGCTTGAGATTATTGATGGAGTTGATGTGTCAAAAAGTCTTTTTGATTACGCTCGTCGTCAGGGAAGGGGGGTCACCATCCTCAATGGAAATGGAGAGGTGGCGCGTGCCAGGCTTCGCCAACCCACAGGAAGAGTCATAACTCTTCAAGGAAAGTTAGAGATTCTTTCGATATCTGGGACAATTTTTCCGTCACCAACACCTGAGATTGTTGGAGGATTGAGAGTTTGCTTATCAGGAACAAATGGACAGATGATTGAGGGTAGTGTGATTTCTCCATTAATGGCTTCAGGTCCAGTGATTTTGATAGCTACTTCATTTGCAAACATTATTTCCGAAAAGATTTCTTCGATAGCGAATGATTAA 588 0.4133 MSSHDVENIQELQLFTIPQLQVQTPNINTTINNNNPEPTTTIVRRPRGRPIGSKNKPKTPIVVTYENPNALCSHVLEIIDGVDVSKSLFDYARRQGRGVTILNGNGEVARARLRQPTGRVITLQGKLEILSISGTIFPSPTPEIVGGLRVCLSGTNGQMIEGSVISPLMASGPVILIATSFANIISEKISSIAND 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03788 195 ProSiteProfiles PPC domain profile profile. 68 195 IPR005175 -
Vifa4g03788 195 MobiDBLite consensus disorder prediction 27 59 - -
Vifa4g03788 195 Pfam Plants and Prokaryotes Conserved (PCC) domain 74 182 IPR005175 -
Vifa4g03788 195 PIRSF ESCAROLA 3 191 IPR014476 GO:0003680
Vifa4g03788 195 MobiDBLite consensus disorder prediction 27 41 - -
Vifa4g03788 195 CDD DUF296 74 181 IPR005175 -
Vifa4g03788 195 Gene3D - 73 192 - -
Vifa4g03788 195 SUPERFAMILY AF0104/ALDC/Ptd012-like 70 188 - -
Vifa4g03788 195 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 35 189 IPR014476 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03788 Vifa-Chr4 1212214943 1212215530 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03788 34 189 AT-hook Motif Nuclear Localized (AHL) Family AT1G76500 51.497 9.62e-48 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03788 - - psat:127088334 225.328