Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03771 ATGGCTTTTCACGACCATCTTCAGCAAGAAATAGCGTTCCAGCGATTCACGGAAGAAGAAGAAGATGAAGATAGAGTATCATGGATGAACAACGGCGTAAACGCGCGTCAACAGAATTTCATGCACTTGGAGCCGGAGAGGAGAGAGAAAAGCATGGATCGGAATCGGAGCAAGAACAACTGTGAAACGGAGGAGTTAAGAGAATATAAGGCGGAGATATTAGGTCATCCGCTTTACGACCAGTTGTTATCTGCTCATGTTTCGTGTCTCCGAATTGCGACTCCGGTGGATCAGCTTCCGAGAATCGATGCTCAGCTTCAACAATCGCAGCGCGTTCTTCACAAATACTCTTCCATTGGAATTGGAAACATGGATCCCAAGGAACTTGATCACTTTATGACACATTATGTTCTTTTGCTGTGCGCCTTCAAAGAACAGCTGCAACAGCATGTCCGTGTTCATGCCATGGAGGCAGTGATGGCTTGTTGGGATCTTGAGCAGTCTCTGCAAAGCTTGACAGGTGTATCTTCGGGTGAAGGAACGGGAGCAACAATGTCAGACGATGAAGAGGAGCAGACAGAAAGTAATGCCAAGTTGTACAACGAAGGAAGCAGCCTTGATGGCATTGATACTTTTGGATTTGGTCCTCTTGTCCCCACAGAGACTGAAAGGTCTTTGATGGAGCGTGTTAGGCTTGAACTCAAGCATGAGCTAAAACAAGGTTACAAGGAGAAAATTGTTGATGTAAGAGAAGAAATTCTACGAAAGAGAAGAGCTGGGAAGCTACCTGGAGACACCACGTCACTTCTGAAAGCTTGGTGGCAGTCACATTCTAAATGGCCCTATCCAACTGAGGAAGACAAAGCTAGACTGGTGCAGGAAACAGGCTTACAGTTAAAGCAGATAAACAATTGGTTCATTAATCAAAGGAAAAGGAATTGGCATGCTAACTCTCCATCCTCTAGTAACTCCAAAACCAAGCGCAAGAGTGCAGGTGATACCAGTAACCAGAGCTTCATGTGA 1023 0.4545 MAFHDHLQQEIAFQRFTEEEEDEDRVSWMNNGVNARQQNFMHLEPERREKSMDRNRSKNNCETEELREYKAEILGHPLYDQLLSAHVSCLRIATPVDQLPRIDAQLQQSQRVLHKYSSIGIGNMDPKELDHFMTHYVLLLCAFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGVSSGEGTGATMSDDEEEQTESNAKLYNEGSSLDGIDTFGFGPLVPTETERSLMERVRLELKHELKQGYKEKIVDVREEILRKRRAGKLPGDTTSLLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANSPSSSNSKTKRKSAGDTSNQSFM 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03771 340 SMART ELK_2 233 254 IPR005539 GO:0003677
Vifa4g03771 340 ProSiteProfiles ELK domain profile. 233 253 IPR005539 GO:0003677
Vifa4g03771 340 MobiDBLite consensus disorder prediction 313 340 - -
Vifa4g03771 340 MobiDBLite consensus disorder prediction 174 196 - -
Vifa4g03771 340 SMART KNOX2_2 118 174 IPR005541 GO:0003677|GO:0005634
Vifa4g03771 340 Coils Coil 52 72 - -
Vifa4g03771 340 SMART HOX_1 255 320 IPR001356 GO:0003677
Vifa4g03771 340 CDD homeodomain 256 315 IPR001356 GO:0003677
Vifa4g03771 340 SMART KNOX1_2 67 111 IPR005540 GO:0003677|GO:0005634
Vifa4g03771 340 Pfam ELK domain 233 254 IPR005539 GO:0003677
Vifa4g03771 340 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 108 324 - -
Vifa4g03771 340 Pfam KNOX2 domain 126 173 IPR005541 GO:0003677|GO:0005634
Vifa4g03771 340 FunFam homeobox protein knotted-1-like 3 isoform X1 254 315 - -
Vifa4g03771 340 Gene3D - 252 331 - -
Vifa4g03771 340 Pfam KNOX1 domain 69 110 IPR005540 GO:0003677|GO:0005634
Vifa4g03771 340 SUPERFAMILY Homeodomain-like 255 320 IPR009057 -
Vifa4g03771 340 Pfam Homeobox KN domain 273 312 IPR008422 GO:0003677|GO:0006355
Vifa4g03771 340 ProSiteProfiles 'Homeobox' domain profile. 253 316 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03771 Vifa-Chr4 1205865411 1205869546 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03771 69 337 Homeobox Transcription Factor Family AT5G11060 79.927 6.59e-158 446
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Vifa4g03771 KNOX2 4.5e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03771 - - gmx:100803673 560.066