Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03768 ATGGGTTCAACATCTAGTCGACTCGGGTCTCGTCCTTCTCCTCCAAGGGTCAACAACCATCGCTTCAGATTCTCCTCCTTTCTCTGCGGCTCCTCCACCTCTCGCTCTATCTCTCAGATGGAAGACCATCAATATGAACAGCTTCATGTTGATTCGGCTAGACATTTTAATGATGACATTCAGAAAGTCCCTCTTGAATCGTCATTATCATGTACTGAAGAAGCTAGAATAAGTTGCTGCCCTCATGCTGAAACTTCAATCTCAACCAATATGAGAACTGAGTTCCGCGGGAATGCTACTGTTGAAGGTTCTGATGGGAATGATGCAATAAGTAATCAGAGGAATTGCTTGTCTGATCATAAGGAACTAGTTTCTCCTTATCAGGTATGTGCTGGTCATAGTCATCCTGAATCATATAGTGATGGTAACAACACTGCTAGTACTTCATTTGTTGAACAACGGTCTTCAGATCCAGTCTCTGTAAATGATTTTACTAACATGGATAGAATCAATAATGTTGATGATCCAGTGTTTAGTGGTGTCTCTCGAATCTCTCATCATGAGACCGCACACCCAAGGAGCTCAATCTCTCAAGAGCATGGAAATGCCAGTTCTGGTGAAATTTCTATTGAGGTTGACACAAATTCAGGCATATCTATCCATAGTTCTTCCACTCATGTTGCTCAAGCGTCGAATGCACCACCAACTCCTGAAGTGCCAGAAGATGAATCTCGTCGCGAAACGATACCTTCAGGTTTAGGTATTCTTGTGTCCAATCGGGAAATAGTTCAGGGAAATGATGGTATGTTTCAAGTGGATGTGGTCGCAATATCCTCCAACATTTTGTCTGGAAGCAATGCAGATGCGGATGATGATGAAGCCAGAAGGAATGGTAGAAGGTTATTTTGGGATGCTTTTTCACAACGTAGTTCTAGAAGGTTTGGTGATTCTCCAACCATCGTTATCTCCACGGGAGGCACTGATGATTTGGGATCTCAAGATCGGTGGCAGGTTGATTTTGATGAGGATTTATCAAATGACGGGCTTGGACGTCTGCCCAGATATAGGGGCAGTAGAATTCGCAGATTGAGTGAAAGAGTGCGACACTCAAGATCTGAGATCTGGGAAAGACTTCGTGGAGGCCTTGATGAGATTGGACGGTTGAACTCTTCATGTCCATTAGGACTCCACGCAGACGGTATGTGCTCGTGTGAGTCATTCCCAATGGCTGAAGAATCTAGCTCTCGGTCAAGTATTTCAAGAATAGTAATGCTGGCTGAGGCTCTGTTTGAGGTTTTAGATGAAATCCACCGACAACCTTCATCCCTTTCCTTATCCACGCTCTCACTCCCTGCACCTGAATCAGTCGTGGACTCTTTCCCTCTGAAGTCTCACAAAAAGGTTGATGCAGCTGATGGAGGCAATGATGCTGAACAATGTTACATATGCTTGGCGGAGTATGAAGACGGGGACCAAATACGTGTTCTTCCTTGCAAGCACGAATATCACATGTTGTGTGTCGATAAGTGGCTGAAGGAAATACATGGGGTATGCCCTCTGTGTCGCGGCCATGTTTGTGGAGGCTCAACAGAGGCGTCAGTTCACTCAGAAGTGCAGTCAATAGTTGAAATTTAG 1635 0.4465 MGSTSSRLGSRPSPPRVNNHRFRFSSFLCGSSTSRSISQMEDHQYEQLHVDSARHFNDDIQKVPLESSLSCTEEARISCCPHAETSISTNMRTEFRGNATVEGSDGNDAISNQRNCLSDHKELVSPYQVCAGHSHPESYSDGNNTASTSFVEQRSSDPVSVNDFTNMDRINNVDDPVFSGVSRISHHETAHPRSSISQEHGNASSGEISIEVDTNSGISIHSSSTHVAQASNAPPTPEVPEDESRRETIPSGLGILVSNREIVQGNDGMFQVDVVAISSNILSGSNADADDDEARRNGRRLFWDAFSQRSSRRFGDSPTIVISTGGTDDLGSQDRWQVDFDEDLSNDGLGRLPRYRGSRIRRLSERVRHSRSEIWERLRGGLDEIGRLNSSCPLGLHADGMCSCESFPMAEESSSRSSISRIVMLAEALFEVLDEIHRQPSSLSLSTLSLPAPESVVDSFPLKSHKKVDAADGGNDAEQCYICLAEYEDGDQIRVLPCKHEYHMLCVDKWLKEIHGVCPLCRGHVCGGSTEASVHSEVQSIVEI 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03768 544 Pfam Ring finger domain 479 522 IPR001841 -
Vifa4g03768 544 FunFam Putative RING zinc finger domain superfamily protein 447 527 - -
Vifa4g03768 544 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 1 539 - -
Vifa4g03768 544 MobiDBLite consensus disorder prediction 137 161 - -
Vifa4g03768 544 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 444 526 IPR013083 -
Vifa4g03768 544 MobiDBLite consensus disorder prediction 185 205 - -
Vifa4g03768 544 SUPERFAMILY RING/U-box 468 525 - -
Vifa4g03768 544 MobiDBLite consensus disorder prediction 223 249 - -
Vifa4g03768 544 ProSiteProfiles Zinc finger RING-type profile. 480 522 IPR001841 -
Vifa4g03768 544 MobiDBLite consensus disorder prediction 135 161 - -
Vifa4g03768 544 SMART ring_2 480 521 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03768 Vifa-Chr4 1204127373 1204130786 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03768 391 526 C3H Transcription Factor Family AT5G45290 52.318 8.77e-39 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03768 - - gmx:100783604 725.702
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g03768 4 1204127373 1204130786 Vifa4g03768 4 1204127373 1204130786 ECH