Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03766 ATGTGTGTGCAAGAGGATGAACAAGTTGATCAAGATAATGATAAAAGAATTCCATGGCCTTTGCATTGTGATCTGTTGCATGCCCAGATGGATAATACAGAAAAAGACTCTTCTTTTGGAATTTCCAATGGCCAGATCAGTGTTGCAGATTCATTTCCTCTGGAGAGCATTTGTGAAGATGCAGAGACTACAGAGAAAAAACAGAACCTGATAAATTTTGTCCCCACGCTTCGGTCGGGAGAGTGGTCTGATATTGGAGGTCGGCCTTACATGGAGGATACTCATATATGCATCGGAGACTTGGCGAAGAAATTCGGTTATAATGTTGTCTGCGACGAAACTATTTCCTTTTATGGTGTATTTGATGGACATGGAGGGAAGAGTGCTGCGCAATTTGTCCGCGATCATCTGCCGAGGGTGATTGTTGAGGATTCTGACTTCCCTCTTGAACTCGAGAAGGTGGTCACGAGGTCATTTTTGGAGACTGATTCGGAGTTTGCAAAAACATGCTCGGCTGAATCATCGCTTTCTTCTGGTACAACTGCATTGACAGCAATTATATTTGGAAGGTCTTTACTCGTGGCTAATGCCGGAGACTGCCGCGCTGTTTTGTCCCGGGCCGGAGGGGCTATAGAAATGTCCAAAGATCACAGGCCGTTATGTATGAAAGAAAGGACGAGGATTGAGTCGCTCGGCGGATTTGTTGATGATGGTTACTTGAACGGACAGTTAGCAGTGACACGTGCTCTGGGCAACTGGCATCTTGAAGGAATGAAGGAAATGAGTGGAAGAGGTGGACCATTGAGTGCTGAGCCAGAACTTAAACTGACAACATTGACGAAAGATGACGAGTTTATGATAATCGGAAGTGATGGAATATGGGATGTTTTTCGTAGCCAAAATGCGGTTGATTTTGCTAGGAGGAAGCTTCAACAGCATAATGATGTTAAACAATGTTGCAAGGAAATAGTAGGTGAAGCAATAAAGAGAGGGGCAACAGATAATTTAACTGTTGTGATGGTGTGTTTTCAATCAGATCCACCGCCACCTATGATTATTGAAAGGCCTAATAGAGTTAGGAGAAGTATATCTGCTGAGGGACTTCAGAATCTTAAATGTCTGCTAGAAGGATAG 1134 0.4365 MCVQEDEQVDQDNDKRIPWPLHCDLLHAQMDNTEKDSSFGISNGQISVADSFPLESICEDAETTEKKQNLINFVPTLRSGEWSDIGGRPYMEDTHICIGDLAKKFGYNVVCDETISFYGVFDGHGGKSAAQFVRDHLPRVIVEDSDFPLELEKVVTRSFLETDSEFAKTCSAESSLSSGTTALTAIIFGRSLLVANAGDCRAVLSRAGGAIEMSKDHRPLCMKERTRIESLGGFVDDGYLNGQLAVTRALGNWHLEGMKEMSGRGGPLSAEPELKLTTLTKDDEFMIIGSDGIWDVFRSQNAVDFARRKLQQHNDVKQCCKEIVGEAIKRGATDNLTVVMVCFQSDPPPPMIIERPNRVRRSISAEGLQNLKCLLEG 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03766 377 CDD PP2Cc 78 343 IPR001932 -
Vifa4g03766 377 Pfam Protein phosphatase 2C 90 335 IPR001932 -
Vifa4g03766 377 PANTHER PROTEIN PHOSPHATASE 2C 65 341 IPR015655 GO:0004722|GO:0006470
Vifa4g03766 377 Gene3D - 56 346 IPR036457 -
Vifa4g03766 377 ProSiteProfiles PPM-type phosphatase domain profile. 78 343 IPR001932 -
Vifa4g03766 377 ProSitePatterns PPM-type phosphatase domain signature. 117 125 IPR000222 GO:0043169
Vifa4g03766 377 SMART PP2C_4 68 341 IPR001932 -
Vifa4g03766 377 FunFam Probable protein phosphatase 2C 22 60 346 - -
Vifa4g03766 377 SUPERFAMILY PP2C-like 68 344 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03766 Vifa-Chr4 1202836384 1202838000 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03766 59 377 PP2C-type Phosphatase Gene Family AT2G25620 58.567 1.19e-130 378
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBP Vifa4g03766 PP2C 1.9e-68 CL0238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03766 K14803 - gmx:100782648 635.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g03766 4 1202836384 1202838000 Vifa4g03766 4 1202836384 1202838000 ECH