Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03762 ATGGGAAGCAACAACGTTGAGAAGATCCCTAGCAATAACAGCTCTGGAAGTTCAGAAACCACTATTGAGATAAAGATCAAAACACTGGATTCACAAACTTATTTCCTCAAAGTTGATAAACAGATGCCAGTTCCTGCTCTGAAAGAACAGATTGCTTCTGTAACTGGAGTGATATCAGAACAGCAGCGCTTAATTTGCCAAGGGAAAGTTCTCAAGGATGATCAACTATTGTCTGCCTACCTAGACGTTGAAGATGGTCACACATTGCATCTGGTTGTGAGGCAACCTAATCTGCCACCTCCAGGAAGTCTGCCCAATCATGCAGTGACTGAGCCAAATTCAAGCACAAGCCATAGTCACGGTATTCAAGTCGCTCCAGGTGTCTTCGTTGAAACTTTTAATGTTCCTGTTCACGGCGAGGGAGTTCCGCCTGAAATAAATAGGATTGTTTCTGCTGTTCTTGGCTCTATCGCTGGACTTCCAAATTTTGCAAGTGGTGGTGAAGGGATTGTTGTCAGGGAGCATGATTCCCAAGGCCTTGGAAGAACTTCAGATTCTGGTGGAGTATCAGACCTGAACCGTCCTCTACCTGATCAAACTGGTTTACGTAGTTTGTCGGATAGATTACGGAATACTTTTGGATATCCGGCATCAGTTTCTCTAGGGTCTTTGCAGCCTCCTGTCATTCCTGATTCTTTGACAACTTTGTCCCAGTATCTAAGTCATATGAGCCATGAATTTGATACAATTGTCAGAGAAGGGGAGAATAACGCCCAAGCAGCTGAGGCTCGTAGTAATGGTGAAATGGGACCTGCTTCTTCACGTTTGGGTTCAACACCAGAAAGTCTTTCATCACCTGCATCCCTGGCAGAAGTCTTGCGTTCTACCAGACGAATGATCACTGAACAAGCTGGGGAGTGCATACTTCAACTGGCAAGACAACTGGAGAATCAAACAGATGTAACTGACGTCCAATTGCGATCAACCGCCCAATCTAGGGCTTTGGCATCTGGAGTATTGTTTTATAACCTTGGTGCATTTTTACTTGAGCTAGGTCGAACAACCATGACATTGCGTATGGGTCAAACACCGTCTGAAGCTATAGTTAATGGTGGACCCGCAGCTTTTATATCACCTACTGGTCCTAATCATATCATGGTTCAGCCTCTTCCTTTTCAACCTGGAGCAAGCTTTGGTGCTGTCCCTGTAGGAGCTGCACAGTCTGACTCAACTTTAGGTAGTGGACTTGGCTCAAATTTTTTACCAAGGCGTATCGATATACAGATAAGACGAGGCACTTCAGCAACCACACCGAATGCCAATCAAGAAGAGCGTGGGGATACACAACAACCTGCTTCAGTTCAAAGAAATCCAGCTGAAAGTTCTGCTAATCAAGCAGGCGCTAGGCGTCCAGATGCATCTATTGCTGGAGAGTCAGGAATAAGGATAGTGCCTATTAGAACCATGGTTGCAACAGTACCTGGTCCCTTGGGCCGTCCTTCAGAATCATCTGCTACTTCTACAGGGCTTTACCATCCAGTTATTGGGAGATTTCAACGTGTAACTACAGGACATGCAAATAGCGAACAGGGATCTCAATCAGCAAGTCAGGATCGTGCTGCACAACATTCAACTCCTGAATCCACATTGCCTAGGCAAAGCGCAGAAGACTCTGCAAGGAATGGCACCTCATCAACTCCAAACACGAGACAAGAGCTATCTAGTTCTCGTGTTGTACATATCAATATTCTGTCAGCTGGTGGGCCCCAAAACAATCAAGATTCTGATAGAAGCAATGTAATTCAGTTTTTAAGAACACTCTTTCCTGGTGGAGAAATTCATGTGGAGGATTCAAGCTTACAAGGAGCAAATGCGGGTTCGGCCGCAGTGCATGCTGCAACGTCTACGGCTGCTCCCCAAGTCCCTGAAGCTGAACCCCCTGTTAGTGATGAAGGAGTATTTTTGTCAAATGTACTCCGTGAAATCATGCCGGTCATATCTCAACAAGTAGGATCTGAAAGAAATTCTTCTGATGATCAAATGGCTCAAGATTCGTCGACTCAGGTTGAAACTAACGCTGGGACATCACGGAGACACAGCGGTTCTGAACCAAGCGCTCCAGATCCAAAACGCCAAAAGATGGAATGA 2148 0.4548 MGSNNVEKIPSNNSSGSSETTIEIKIKTLDSQTYFLKVDKQMPVPALKEQIASVTGVISEQQRLICQGKVLKDDQLLSAYLDVEDGHTLHLVVRQPNLPPPGSLPNHAVTEPNSSTSHSHGIQVAPGVFVETFNVPVHGEGVPPEINRIVSAVLGSIAGLPNFASGGEGIVVREHDSQGLGRTSDSGGVSDLNRPLPDQTGLRSLSDRLRNTFGYPASVSLGSLQPPVIPDSLTTLSQYLSHMSHEFDTIVREGENNAQAAEARSNGEMGPASSRLGSTPESLSSPASLAEVLRSTRRMITEQAGECILQLARQLENQTDVTDVQLRSTAQSRALASGVLFYNLGAFLLELGRTTMTLRMGQTPSEAIVNGGPAAFISPTGPNHIMVQPLPFQPGASFGAVPVGAAQSDSTLGSGLGSNFLPRRIDIQIRRGTSATTPNANQEERGDTQQPASVQRNPAESSANQAGARRPDASIAGESGIRIVPIRTMVATVPGPLGRPSESSATSTGLYHPVIGRFQRVTTGHANSEQGSQSASQDRAAQHSTPESTLPRQSAEDSARNGTSSTPNTRQELSSSRVVHINILSAGGPQNNQDSDRSNVIQFLRTLFPGGEIHVEDSSLQGANAGSAAVHAATSTAAPQVPEAEPPVSDEGVFLSNVLREIMPVISQQVGSERNSSDDQMAQDSSTQVETNAGTSRRHSGSEPSAPDPKRQKME 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03762 715 MobiDBLite consensus disorder prediction 434 479 - -
Vifa4g03762 715 MobiDBLite consensus disorder prediction 524 575 - -
Vifa4g03762 715 SUPERFAMILY Ubiquitin-like 16 103 IPR029071 -
Vifa4g03762 715 MobiDBLite consensus disorder prediction 258 287 - -
Vifa4g03762 715 ProSiteProfiles Ubiquitin domain profile. 22 98 IPR000626 GO:0005515
Vifa4g03762 715 SMART ubq_7 22 94 IPR000626 GO:0005515
Vifa4g03762 715 MobiDBLite consensus disorder prediction 668 715 - -
Vifa4g03762 715 MobiDBLite consensus disorder prediction 96 121 - -
Vifa4g03762 715 MobiDBLite consensus disorder prediction 178 203 - -
Vifa4g03762 715 FunFam Large proline-rich protein BAG6 14 108 - -
Vifa4g03762 715 MobiDBLite consensus disorder prediction 434 468 - -
Vifa4g03762 715 MobiDBLite consensus disorder prediction 668 702 - -
Vifa4g03762 715 Pfam Ubiquitin family 24 95 IPR000626 GO:0005515
Vifa4g03762 715 MobiDBLite consensus disorder prediction 107 121 - -
Vifa4g03762 715 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 9 696 - -
Vifa4g03762 715 MobiDBLite consensus disorder prediction 271 287 - -
Vifa4g03762 715 Gene3D - 15 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03762 Vifa-Chr4 1201095084 1201103036 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03762 22 94 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 36.986 3.96e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03762 K23390 - gmx:100783070 1018.45