Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03761 ATGGGAAGCAACAACGTTGAGAAGATCCCTAGCAATAACAGCTCTGGAAGTTCAGAAACCACTATTGAGATAAAGATCAAAACACTGGATTCACAAACTTATTTCCTCAAAGTTGATAAACAGATGCCAGTTCCTGCTCTGAAAGAACAGATTGCTTCTGTAACTGGAGTGATATCAGAACAGCAGCGCTTAATTTGCCAAGGGAAAGTTCTCAAGGATGATCAACTATTGTCTGCCTACCACGTTGAAGATGGTCACACATTGCATCTGGTTGTGAGGCAACCTAATCTGCCACCTCCAGGAAGTCTGCCCAATCATGCAGTGACTGAGCCAAATTCAAGCACAAGCCATAGTCACGGTATTCAAGTCGCTCCAGGTGTCTTCGTTGAAACTTTTAATGTTCCTGTTCACGGCGAGGGAGTTCCGCCTGAAATAAATAGGATTGTTTCTGCTGTTCTTGGCTCTATCGCTGGACTTCCAAATTTTGCAAGTGGTGGTGAAGGGATTGTTGTCAGGGAGCATGATTCCCAAGGCCTTGGAAGAACTTCAGATTCTGGTGGAGTATCAGACCTGAACCGTCCTCTACCTGATCAAACTGGTTTACGTAGTTTGTCGGATAGATTACGGAATACTTTTGGATATCCGGCATCAGTTTCTCTAGGGTCTTTGCAGCCTCCTGTCATTCCTGATTCTTTGACAACTTTGTCCCAGTATCTAAGTCATATGAGCCATGAATTTGATACAATTGTCAGAGAAGGGGAGAATAACGCCCAAGCAGCTGAGGCTCGTAGTAATGGTGAAATGGGACCTGCTTCTTCACGTTTGGGTTCAACACCAGAAAGTCTTTCATCACCTGCATCCCTGGCAGAAGTCTTGCGTTCTACCAGACGAATGATCACTGAACAAGCTGGGGAGTGCATACTTCAACTGGCAAGACAACTGGAGAATCAAACAGATGTAACTGACGTCCAATTGCGATCAACCGCCCAATCTAGGGCTTTGGCATCTGGAGTATTGTTTTATAACCTTGGTGCATTTTTACTTGAGCTAGGTCGAACAACCATGACATTGCGTATGGGTCAAACACCGTCTGAAGCTATAGTTAATGGTGGACCCGCAGCTTTTATATCACCTACTGGTCCTAATCATATCATGGTTCAGCCTCTTCCTTTTCAACCTGGAGCAAGCTTTGGTGCTGTCCCTGTAGGAGCTGCACAGTCTGACTCAACTTTAGGTAGTGGACTTGGCTCAAATTTTTTACCAAGGCGTATCGATATACAGATAAGACGAGGCACTTCAGCAACCACACCGAATGCCAATCAAGAAGAGCGTGGGGATACACAACAACCTGCTTCAGTTCAAAGAAATCCAGCTGAAAGTTCTGCTAATCAAGCAGGCGCTAGGCGTCCAGATGCATCTATTGCTGGAGAGTCAGGAATAAGGATAGTGCCTATTAGAACCATGGTTGCAACAGTACCTGGTCCCTTGGGCCGTCCTTCAGAATCATCTGCTACTTCTACAGGGCTTTACCATCCAGTTATTGGGAGATTTCAACGTGTAACTACAGGACATGCAAATAGCGAACAGGGATCTCAATCAGCAAGTCAGGATCGTGCTGCACAACATTCAACTCCTGAATCCACATTGCCTAGGCAAAGCGCAGAAGACTCTGCAAGGAATGGCACCTCATCAACTCCAAACACGAGACAAGAGCTATCTAGTTCTCGTGTTGTACATATCAATATTCTGTCAGCTGGTGGGCCCCAAAACAATCAAGATTCTGATAGAAGCAATGTAATTCAGTTTTTAAGAACACTCTTTCCTGGTGGAGAAATTCATGTGGAGGATTCAAGCTTACAAGGAGCAAATGCGGGTTCGGCCGCAGTGCATGCTGCAACGTCTACGGCTGCTCCCCAAGTCCCTGAAGCTGAACCCCCTGTTAGTGATGAAGGAGTATTTTTGTCAAATGTACTCCGTGAAATCATGCCGGTCATATCTCAACAAGTAGGATCTGAAAGAAATTCTTCTGATGATCAAATGGCTCAAGATTCGTCGACTCAGGTTGAAACTAACGCTGGGACATCACGGAGACACAGCGGTTCTGAACCAAGCGCTCCAGATCCAAAACGCCAAAAGATGGAATGA 2145 0.455 MGSNNVEKIPSNNSSGSSETTIEIKIKTLDSQTYFLKVDKQMPVPALKEQIASVTGVISEQQRLICQGKVLKDDQLLSAYHVEDGHTLHLVVRQPNLPPPGSLPNHAVTEPNSSTSHSHGIQVAPGVFVETFNVPVHGEGVPPEINRIVSAVLGSIAGLPNFASGGEGIVVREHDSQGLGRTSDSGGVSDLNRPLPDQTGLRSLSDRLRNTFGYPASVSLGSLQPPVIPDSLTTLSQYLSHMSHEFDTIVREGENNAQAAEARSNGEMGPASSRLGSTPESLSSPASLAEVLRSTRRMITEQAGECILQLARQLENQTDVTDVQLRSTAQSRALASGVLFYNLGAFLLELGRTTMTLRMGQTPSEAIVNGGPAAFISPTGPNHIMVQPLPFQPGASFGAVPVGAAQSDSTLGSGLGSNFLPRRIDIQIRRGTSATTPNANQEERGDTQQPASVQRNPAESSANQAGARRPDASIAGESGIRIVPIRTMVATVPGPLGRPSESSATSTGLYHPVIGRFQRVTTGHANSEQGSQSASQDRAAQHSTPESTLPRQSAEDSARNGTSSTPNTRQELSSSRVVHINILSAGGPQNNQDSDRSNVIQFLRTLFPGGEIHVEDSSLQGANAGSAAVHAATSTAAPQVPEAEPPVSDEGVFLSNVLREIMPVISQQVGSERNSSDDQMAQDSSTQVETNAGTSRRHSGSEPSAPDPKRQKME 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03761 714 MobiDBLite consensus disorder prediction 270 286 - -
Vifa4g03761 714 PRINTS Ubiquitin signature 32 52 IPR019956 -
Vifa4g03761 714 PRINTS Ubiquitin signature 53 73 IPR019956 -
Vifa4g03761 714 PRINTS Ubiquitin signature 74 95 IPR019956 -
Vifa4g03761 714 MobiDBLite consensus disorder prediction 667 714 - -
Vifa4g03761 714 Gene3D - 15 110 - -
Vifa4g03761 714 MobiDBLite consensus disorder prediction 433 467 - -
Vifa4g03761 714 SUPERFAMILY Ubiquitin-like 16 102 IPR029071 -
Vifa4g03761 714 MobiDBLite consensus disorder prediction 523 574 - -
Vifa4g03761 714 Pfam Ubiquitin family 24 94 IPR000626 GO:0005515
Vifa4g03761 714 MobiDBLite consensus disorder prediction 667 701 - -
Vifa4g03761 714 SMART ubq_7 22 93 IPR000626 GO:0005515
Vifa4g03761 714 MobiDBLite consensus disorder prediction 257 286 - -
Vifa4g03761 714 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 9 695 - -
Vifa4g03761 714 ProSiteProfiles Ubiquitin domain profile. 22 97 IPR000626 GO:0005515
Vifa4g03761 714 MobiDBLite consensus disorder prediction 177 202 - -
Vifa4g03761 714 MobiDBLite consensus disorder prediction 433 478 - -
Vifa4g03761 714 FunFam Large proline-rich protein BAG6 14 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03761 Vifa-Chr4 1201095084 1201103036 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03761 22 93 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 37.500 1.22e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03761 K23390 - gmx:100783070 1026.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g03761 4 1201095084 1201103036 Vifa4g03761 4 1201095084 1201103036 ECH