Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03748 ATGGATGAGGTTAGACATGGAGGTAGTAGTAGTTGTAGTAGTGAAGCGGAGCAGACTCAGTCCAGAGCTACGTTTGTTGAAACGGCGTCGTCTTCCTCTTCATCAGGATGGTGTCCCAGGGAGCTTGCTTTTGCTCCTTTTGTGCCGCAGCAACAAAAAGAAGATAAACGAGTTAATGCTGCTAGGAAATCCTCAAAGTATCGTGCACTTGTTAGGAAGCCTTTGGTGGCAAGATTGACCAAGGAAATAGTTGAAACATATCAAATATGCAATCCACAGTTTAAATATTCCGAAGATCTAAATCCAAAGAGATTTTTGACCAGTCCATCTACTGGAGTGCTTAATGATGGCTATGATAATCTAAACTCAGATCTTATTCTGACAGTGAATTTGGTCTTGATCCATGTAGAGAAAAGTAGAAGATATACTGTCAAAGATCTCCTTGGCCACGGGACATTTGGACAAGTGGCCAAATGCTGGGATTCCGATACCAACAGTTTTGTTACTGTGAAGATCATTAAAAATCAACCTGCGTATTATCAACAGGCGCTGGTTGAAGTAACTATTTTAACAACGTTAAATAAGAAGTACGATCCTGAGGATAAGCATCACATTGTTCGTATATTTGATTATTTTGTATATCAACGGCATTTGTGCATATGCTTTGAATTACTGGACACAAACCTGTATGAGCTTATCAAAATGAATCATTTTAGGGGATTGTCACTTGGTATTGTTCAGCTGTTCTCTAAGCAGATTTTATGTGGACTGGCTCTATTAAAAGATGCTGGCATTACTCATTGTGATCTGAAGCCAGAAAACATCCTTTTATGTGCGAGCAGTGCGAATCAAACAGAAATAAAGATTATTGACTTTGGATCAGCATGCATGGAAAACCGCACTGTGTATTCCTATATTCAGAGTCGATACTATAGGTCTCCTGAGGTTCTTCTTGGATATCAGGGTGGGGAATGA 975 0.3969 MDEVRHGGSSSCSSEAEQTQSRATFVETASSSSSSGWCPRELAFAPFVPQQQKEDKRVNAARKSSKYRALVRKPLVARLTKEIVETYQICNPQFKYSEDLNPKRFLTSPSTGVLNDGYDNLNSDLILTVNLVLIHVEKSRRYTVKDLLGHGTFGQVAKCWDSDTNSFVTVKIIKNQPAYYQQALVEVTILTTLNKKYDPEDKHHIVRIFDYFVYQRHLCICFELLDTNLYELIKMNHFRGLSLGIVQLFSKQILCGLALLKDAGITHCDLKPENILLCASSANQTEIKIIDFGSACMENRTVYSYIQSRYYRSPEVLLGYQGGE 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03748 324 Gene3D Phosphorylase Kinase; domain 1 106 221 - -
Vifa4g03748 324 MobiDBLite consensus disorder prediction 1 36 - -
Vifa4g03748 324 Pfam Protein kinase domain 142 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g03748 324 ProSiteProfiles Protein kinase domain profile. 142 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g03748 324 PANTHER DUAL SPECIFICITY PROTEIN KINASE 16 321 - -
Vifa4g03748 324 SMART serkin_6 142 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g03748 324 FunFam Dual specificity tyrosine-phosphorylation-regulated kinase 1A 105 221 - -
Vifa4g03748 324 Gene3D Transferase(Phosphotransferase) domain 1 222 323 - -
Vifa4g03748 324 ProSitePatterns Serine/Threonine protein kinases active-site signature. 265 277 IPR008271 GO:0004672|GO:0006468
Vifa4g03748 324 SUPERFAMILY Protein kinase-like (PK-like) 136 321 IPR011009 -
Vifa4g03748 324 MobiDBLite consensus disorder prediction 7 36 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03748 Vifa-Chr4 1195893058 1195896930 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03748 138 280 EF-hand Containing Proteins AT5G22840 36.486 6.94e-23 97.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_DYRK-YAK Vifa4g03748 Pkinase 4.5e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03748 K18670 - gmx:100792777 499.59