Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03747 ATGGATGAGGTTAGACATGGAGGTAGTAGTAGTTGTAGTAGTGAAGCGGAGCAGACTCAGTCCAGAGCTACGTTTGTTGAAACGGCGTCGTCTTCCTCTTCATCAGGATGGTGTCCCAGGGAGCTTGCTTTTGCTCCTTTTGTGCCGCAGCAACAAAAAGAAGATAAACGAGTTAATGCTGCTAGGAAATCCTCAAAGTATCGTGCACTTGTTAGGAAGCCTTTGGTGGCAAGATTGACCAAGGAAATAGTTGAAACATATCAAATATGCAATCCACAGTTTAAATATTCCGAAGATCTAAATCCAAAGAGATTTTTGACCAGTCCATCTACTGGAGTGCTTAATGATGGCTATGATAATCTAAACTCAGATCTTATTCTGACAGTGAATTTGGTCTTGATCCATGTAGAGAAAAGTAGAAGATATACTGTCAAAGATCTCCTTGGCCACGGGACATTTGGACAAGTGGCCAAATGCTGGGATTCCGATACCAACAGTTTTGTTACTGTGAAGATCATTAAAAATCAACCTGCGTATTATCAACAGGCGCTGGTTGAAGTAACTATTTTAACAACGTTAAATAAGAAGTACGATCCTGAGGATAAGCATCACATTGTTCGTATATTTGATTATTTTGTATATCAACGGCATTTGTGCATATGCTTTGAATTACTGGACACAAACCTGTATGAGCTTATCAAAATGAATCATTTTAGGGGATTGTCACTTGGTATTGTTCAGCTGTTCTCTAAGCAGATTTTATGTGGACTGGCTCTATTAAAAGATGCTGGCATTACTCATTGTGATCTGAAGCCAGAAAACATCCTTTTATGTGCGAGTGCGAATCAAACAGAAATAAAGATTATTGACTTTGGATCAGCATGCATGGAAAACCGCACTGTGTATTCCTATATTCAGAGTCGATACTATAGGTCTCCTGAGGTTCTTCTTGGATATCATTATGGAGCATCATTAAAGAACATTTTTTGTTCAACTGGAGCTACTGTCCATCACCCCGGACCATGTTTTCCTTCATTTTGTTCACAGGGGTGGGGAATGAATTTGTTGATTTGCCAAAACGAAGTCTTTCTTCAGTACTCTTTAATGTCCCAGTTTTACTAA 1122 0.3922 MDEVRHGGSSSCSSEAEQTQSRATFVETASSSSSSGWCPRELAFAPFVPQQQKEDKRVNAARKSSKYRALVRKPLVARLTKEIVETYQICNPQFKYSEDLNPKRFLTSPSTGVLNDGYDNLNSDLILTVNLVLIHVEKSRRYTVKDLLGHGTFGQVAKCWDSDTNSFVTVKIIKNQPAYYQQALVEVTILTTLNKKYDPEDKHHIVRIFDYFVYQRHLCICFELLDTNLYELIKMNHFRGLSLGIVQLFSKQILCGLALLKDAGITHCDLKPENILLCASANQTEIKIIDFGSACMENRTVYSYIQSRYYRSPEVLLGYHYGASLKNIFCSTGATVHHPGPCFPSFCSQGWGMNLLICQNEVFLQYSLMSQFY 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03747 373 ProSiteProfiles Protein kinase domain profile. 142 373 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g03747 373 FunFam Dual specificity tyrosine-phosphorylation-regulated kinase 1A 105 221 - -
Vifa4g03747 373 Gene3D Transferase(Phosphotransferase) domain 1 223 325 - -
Vifa4g03747 373 MobiDBLite consensus disorder prediction 1 36 - -
Vifa4g03747 373 SMART serkin_6 142 373 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g03747 373 Pfam Protein kinase domain 142 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g03747 373 ProSitePatterns Serine/Threonine protein kinases active-site signature. 265 277 IPR008271 GO:0004672|GO:0006468
Vifa4g03747 373 PANTHER DUAL SPECIFICITY PROTEIN KINASE 17 324 - -
Vifa4g03747 373 Gene3D Phosphorylase Kinase; domain 1 106 222 - -
Vifa4g03747 373 MobiDBLite consensus disorder prediction 7 36 - -
Vifa4g03747 373 SUPERFAMILY Protein kinase-like (PK-like) 136 323 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03747 Vifa-Chr4 1195892996 1195896930 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03747 138 282 EF-hand Containing Proteins AT5G22840 36.000 3.30e-22 96.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_DYRK-YAK Vifa4g03747 Pkinase 7.9e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03747 K18670 - gmx:100792777 495.738