Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03729 ATGGACTGTGGATCTCGGAGTGCGCCGTGGTGGTTTACTTTAGTTACGGTTCTCGGTGCTACAGGGCGTTTGTCGGCGTCGCGTGTTGTTTCTGGTGCATTGTGGACTCGCGGCTGCGATCAGAGCGGAAGGATGGAGTCTCAAGTCGGCGCGATTTGGAGTGTGTTCTTTAAGGATTGCGGTTTCTGGTGCCCTGAAAGAAAAGGAGTGGCAGACTTTCTTCAAGAGGTAACCTCTAAGAAGGATCAAAGGCAATACTGGTACCGCACGGATATTCCTTACAGTTATGTTTCAGTGGATGAGTTCTCTCAAATTTTCAAAACAAGCTACTGGGGAAGAATGTTAGATGATGAGCTCTCACAACCATATGATAAATCTCAATCCCATGAAAGTTCTTTATCATATAGCAAGTACTCCTTAGGAAAATGGGATTTGTTTGAAGCTTGTTCACTATACTATACACTTGTACGCCTAATGACAAATGGAGTTGCCGAGTTGATAATGACTATTACTAGGCTACCCGTTGTTTATAAGCAGAAAGCATTTTATCTCTATCCAGCTTGGGCTTACTGTCTTCCAGCTGCCATACTAAAGATTCCATTTTCAGTCCTTGATTCTCTTGTTTGGACATCAATAACATATTATGTTATAGGCTACAGCCCAGAAATAACAAGGTTCCTCCGCCAGTTCCTTTTGCTTATCGCTCTGCACATGTCATCAACCTCTATGTGTCGTTCCCTTGTTGCAGTTTTTAAAACTGATGTTGCAGCTACAACTGTTGGTTCTTTGGGCTTAGTACTCATGTTCTTGTTTGGAGGCTTTATTCTTCCTCGACCATCATTACCAAAGTGGTTGAGGTGGGGTTTTTGGCTTTCTCCCATGTCATCTGGGGAAATAGGAATAACACTCAATGAATTTCTTGCTCCTCGCTGGCAAAAGATTCAAGAGGGAAACATCACCGTTGGAAGAGAGGTTCTCAAGAGTCGTGGTTTAGACTTTGATAGCAACTTTTTCTGGATATCAATTGCAGCATTACTTGGTTTCACAGTAGTATTTGATATCCTATTTGTAGTAGCATTAACTTACTTAAAAGAGCCAAAGCAATCTCGAGCTTTAGTTTCTAAAAAGAGGTTGACTCAACTAAAAGGAGGAGAAAGAAGCAATGAAGTGGAATTAAAAAATAAGTCAGTAACAGTTGATATTACCCACACATCGAAGGAAGCTGAAAGCACATGGAAAATGGTCTTGCCCTTTTTGCCACTGTCAATAGCATTTAAGGATGTCCACTATTTTGTTGACACTCCTCCAAAGATGAAAAAGCATGGTTCAAATGAGAAAAATTTACAATTTCTCTGCGATATCACGGGAGCATTTAGGCCAGGAATCCTTACTGCTTTGATGGGAGTCAGTGGAGCAGGAAAGACAACACTCATGGACGTGCTTTCAGGAAGAAAAACTGGAGGTATCATTGAAGGAGATATAAGAATTAGAGGGTACCCTAAAGTTCAAAAGACATTTGCAATAGTTTCAGGTTACTGTGAGCAGAACGACATACATTCTCCATATATAACAGTTGAAGAATCTGTTCGATACTCAGCTTGGGTGTGGTTGCCAAGCGAGATTGATTCAGCTACAAAAGGGAAATTTGTTGAAGAAGTCCTTGAAACAATTGAACTTGATGATATAAAGGATAACTTAGTTGGTATCGCTGGTCAAAGTGGCTTATCTACTGAGCAACGTAAAAGGCTAACTATAGCAGTAAAGCTTGTATCCAATCCTTCAATAATTTTTATGGATGAACCTACATCTGGTTTGGATGCCCGAGCTGCTGCTGTAGTTATGCGTGCAGTGAAGAATGTTGTTGGCACTGGTAGGACCACAGTTTGCACCATACATCAGCCAAGCATCGATATATTTGAAACTTTTGATGAGCAATGTATCAATGAAGATGTTGAAAAGGACGATATAAATGATGAAATTCAAGAGGACGACATAAATGATAAAATTCAAGAGGACGACCTAAATGATAAAATTCAAGAGGATGACGTAGATGACGAATTTCAAGAGGACGGCATAGATCTAGATGATGAATTTCAAGAGGAGGATATAGATGGTGAATTTCAAGAGGACGACGTAGATGAAGAATTTATGGAGGATGACATATCTAACGAATTTCAAGAGGACGATCTGGATGCTTTACTCCTAGAAGACAAACTTGAATGA 2223 0.404 MDCGSRSAPWWFTLVTVLGATGRLSASRVVSGALWTRGCDQSGRMESQVGAIWSVFFKDCGFWCPERKGVADFLQEVTSKKDQRQYWYRTDIPYSYVSVDEFSQIFKTSYWGRMLDDELSQPYDKSQSHESSLSYSKYSLGKWDLFEACSLYYTLVRLMTNGVAELIMTITRLPVVYKQKAFYLYPAWAYCLPAAILKIPFSVLDSLVWTSITYYVIGYSPEITRFLRQFLLLIALHMSSTSMCRSLVAVFKTDVAATTVGSLGLVLMFLFGGFILPRPSLPKWLRWGFWLSPMSSGEIGITLNEFLAPRWQKIQEGNITVGREVLKSRGLDFDSNFFWISIAALLGFTVVFDILFVVALTYLKEPKQSRALVSKKRLTQLKGGERSNEVELKNKSVTVDITHTSKEAESTWKMVLPFLPLSIAFKDVHYFVDTPPKMKKHGSNEKNLQFLCDITGAFRPGILTALMGVSGAGKTTLMDVLSGRKTGGIIEGDIRIRGYPKVQKTFAIVSGYCEQNDIHSPYITVEESVRYSAWVWLPSEIDSATKGKFVEEVLETIELDDIKDNLVGIAGQSGLSTEQRKRLTIAVKLVSNPSIIFMDEPTSGLDARAAAVVMRAVKNVVGTGRTTVCTIHQPSIDIFETFDEQCINEDVEKDDINDEIQEDDINDKIQEDDLNDKIQEDDVDDEFQEDGIDLDDEFQEEDIDGEFQEDDVDEEFMEDDISNEFQEDDLDALLLEDKLE 740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03729 740 Gene3D - 437 663 IPR027417 -
Vifa4g03729 740 FunFam Uncharacterized protein 580 650 - -
Vifa4g03729 740 Pfam Plant PDR ABC transporter associated 311 373 IPR013581 -
Vifa4g03729 740 Pfam ABC-2 type transporter 150 304 IPR013525 GO:0016020|GO:0140359
Vifa4g03729 740 MobiDBLite consensus disorder prediction 676 700 - -
Vifa4g03729 740 Pfam ABC transporter 453 603 IPR003439 GO:0005524
Vifa4g03729 740 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 423 687 IPR003439 GO:0005524
Vifa4g03729 740 PANTHER PLEIOTROPIC DRUG RESISTANCE PROTEIN 1-LIKE ISOFORM X1 149 645 - -
Vifa4g03729 740 FunFam ABC transporter G family member 39 437 544 - -
Vifa4g03729 740 SMART AAA_5 460 652 IPR003593 GO:0016887
Vifa4g03729 740 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 447 636 IPR027417 -
Vifa4g03729 740 MobiDBLite consensus disorder prediction 671 700 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03729 Vifa-Chr4 1191190048 1191194896 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03729 557 677 Calmodulin-binding Proteins AT2G36910 29.752 3.51e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03729 K08711 - gmx:100779615 975.696