Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03693 ATGGATTATACTGTTTTGTTGTTGGTGATATTGTTGCAATTGTCAACAATTTTTGGGTCTGAAGTTGTTTTGGAGAGAAAGGATTGTGGCAATAATTGGGTAGCGAATTCGTATTCGAGTCATGTGAATTTTCCTTCAATGGGAGGAAGGAAACTTTTGCAGGAAGATTTGAACAAAAATTCCACATCACAAGGAGATTCTAAGCATGTGTCAAGCAACCATGTCGGAATATTTGCAGGTGGAGCTTTGTTGGTGTGTTGTGCTATTGTTTGCCCTTGTTTCTATGGGAAGAGAAGGAAGACAACTGCTCATACTGTTCTGGAAAAGGACTCAAATTCAAGACATGCTATGCATTCCGAAGAGAGGAAGGTGGATTTAGCCTCCTCCTTTGAACCATCCGTTTCTGATAAGATCCCGTCTAGTCCACTTCGGGTGCCACAAAGTCCATCAAGATTCTCAATGTCTCCAAAACTCAGTAGACTTCAATCATTACATCTCAACCTGAGTCAGGTTTCTAAAGCTACCCGTAATTTTTCAGAAACATTACAAATAGGAGAAGGAGGTTTTGGAACTGTCTACAGGGCTAATTTAGATGATGGCCTGGTCGTGGCTGTAAAACGCGCAAAAAGGGAACATTTTGAGAGTTTGAGAACGGAATTCAGCAGTGAAGTCGAACTTCTGGCCAAAATTGATCATCGAAACCTTGTGAAACTACTTGGTTATATTGACAAAGGAAATGAACGTATCCTGATTACGGAGTTTGTGCCAAATGGTACTCTTCGAGAACATTTGGATGGTTTGTTTGGAAAAATCCTGGATTTCAATCAGCGTCTTGAAATCGCAATTGATGTTGCTCATGGATTGACCTATTTGCATCTGTATGCCGAAAAACAAATTATCCATCGAGATGTGAAATCATCCAACATTCTTCTGACTGAAAGGATGCGAGCTAAAGTTGCTGATTTTGGATTTGCAAAGCTTGGTCCTGTAAGCAATGACCATACACACATTTCTACCAAAGTGAAGGGAACAGTTGAAATTCTGACTGGCCGCCGTCCTGTGGAAATGAAAAAAACTCCTGAAGAGCGAGTTACATTAAGATGGGCCTTCAGGAAATATAATGAAGGAAATATGGTGGAACTGCTTGATCCTTTGATGCAAGAAGCTGTAAAAACAGACATTGTTATGAAGATGTTAGATTTGGCATTTAGCTGTGCAGCACCAGTAAGATCAGATAGACCTGACATGAAAGCAGTTTGTGAACAATTATGGCCAATAAGAGCAGATTACCTCAAGAGCAGTAGTGAAACTGCAAGGAGAGAATGA 1326 0.4035 MDYTVLLLVILLQLSTIFGSEVVLERKDCGNNWVANSYSSHVNFPSMGGRKLLQEDLNKNSTSQGDSKHVSSNHVGIFAGGALLVCCAIVCPCFYGKRRKTTAHTVLEKDSNSRHAMHSEERKVDLASSFEPSVSDKIPSSPLRVPQSPSRFSMSPKLSRLQSLHLNLSQVSKATRNFSETLQIGEGGFGTVYRANLDDGLVVAVKRAKREHFESLRTEFSSEVELLAKIDHRNLVKLLGYIDKGNERILITEFVPNGTLREHLDGLFGKILDFNQRLEIAIDVAHGLTYLHLYAEKQIIHRDVKSSNILLTERMRAKVADFGFAKLGPVSNDHTHISTKVKGTVEILTGRRPVEMKKTPEERVTLRWAFRKYNEGNMVELLDPLMQEAVKTDIVMKMLDLAFSCAAPVRSDRPDMKAVCEQLWPIRADYLKSSSETARRE 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03693 441 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 346 423 - -
Vifa4g03693 441 MobiDBLite consensus disorder prediction 111 127 - -
Vifa4g03693 441 MobiDBLite consensus disorder prediction 111 152 - -
Vifa4g03693 441 ProSitePatterns Protein kinases ATP-binding region signature. 184 206 IPR017441 GO:0005524
Vifa4g03693 441 MobiDBLite consensus disorder prediction 133 152 - -
Vifa4g03693 441 Pfam Protein tyrosine and serine/threonine kinase 183 328 IPR001245 GO:0004672|GO:0006468
Vifa4g03693 441 ProSitePatterns Serine/Threonine protein kinases active-site signature. 299 311 IPR008271 GO:0004672|GO:0006468
Vifa4g03693 441 Gene3D Transferase(Phosphotransferase) domain 1 255 345 - -
Vifa4g03693 441 Gene3D Transferase(Phosphotransferase) domain 1 346 430 - -
Vifa4g03693 441 ProSiteProfiles Protein kinase domain profile. 178 431 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g03693 441 SMART serkin_6 178 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g03693 441 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 3 150 254 - -
Vifa4g03693 441 SUPERFAMILY Protein kinase-like (PK-like) 160 426 IPR011009 -
Vifa4g03693 441 Gene3D Phosphorylase Kinase; domain 1 146 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03693 Vifa-Chr4 1179212998 1179216815 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03693 41 424 Receptor kinase-like Gene Family AT3G46290 32.783 2.40e-54 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IV Vifa4g03693 PK_Tyr_Ser-Thr 8.5e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03693 - - aprc:113845864 633.639