LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa4g03683	ATGACAGAACCTGCATCTTGCAGCGAAAGGACTAAGAAGAAAAAGTCGCAGACTCTTGGTGAAATAACAATTGGAATTGATATTGGCACATCACCATGTAGTATTTCTATATGGAATGGTTTCGAAATAGAGGTTTTCAAAGAGACGTTAAAAGAGATGATTAAGAGTCCACGTGAAGTTTTCGAAGACGACGCCTTTTCTATTGGAGTTAGTAGTGAAGTCACACTCTCCAGTGAGCACGAGGATACACTTTTCAAATTGAAACGCTTGTTTGACATAGTTGATAGTGATTCTGCAGTCTATAAGAGTGTCAATTTCCCATTTCTGATGCATACATTGGACATTAAGGTTCACCCTTTTATTGCTGCATTTGTGAACAAAGTGTGGAGATCACCAACTGCAGTAGAACTCCTTGAAAAGTTTCTGGTGGAATTAAGATTAATGGTTGGTGCTCAGCTGAAAAGACCTATAAGAAATGTCGTGTTTGCAGTTCCGGTTTCATTCAGTCGATTGCAGCTATACCGGATACATTGCGCCTGTGCAAAGGCCGGTCTAAAAGTTATCCGAACGATGCCTCAACCAACAGCAGTCGCTTTGCTGTATGCACTGGACCATTCGGTCAGTGAAATCAGCAAAATGGCTCTTATTTTCAATATGGATTCTGGTTACTGTGATGTTGCTGTTACTGCTATAGCAGCAGGAAAATGCAGAATAAAAGCCCTGACTGGAAGTTCTATTGGTGGAGAAGATTTGCTTGGAAATATGATATGTCATCTCGTACCTGATTCTGTAAATAGAATCAAGAAACGTATTCACGAGGACACAGAAATTAAATCAATGGCTCTTCTTCGATGTACAATTCAGGAAGCGATTACCCGGCTTTCGTCTCAGACAAGTGTTGAGGTTGATTTAGACATGGGAGATGATTTGAAGATACACAAGGTTGTAACGCGGGAGCAGTTTGAGGAAGTAAACAAAGAGGTGTTTGACAAGTGTGAAAGACTAATCATCCAATGTTTACATGATGCAAAGGTAGAAGTTGATGATATAAATGATGTGATAATTGTTGGTGGATGTTATAATATACCAAAGGTGAAAAATCTTGTTACCAAAATATGCAAAAGAAAGGAACTTTATACATATATCAATCCTTTAGAAGGTGCAATTTATGGTGCAGCTGTAGCAGGAGCCATTGCTTCAGGCATTAGATTTATGTATGGGAAGTTGCAGCTGTTTGATTTTCATGCTACACTTGTTGCCATCGGAATTCGTGCGAATGGAAACAACTTCGTACCTGTAATTCCGAGGAACACATCATTGCCAACAACAAGGCACGTAGCTTGCACTACAATTCATGATAATCAAAATGCAGCGTTGATCGTTGTGTACGAAGGCGAGGGACAGAAAGCTGAAGAAAACCATCTTCTGGGATATTTCAAAATAACAGAAATACCAGAAGCATCAAAAGGAGTTCCGGAGATCAATGTCTGCATGGAGATAGACCGCGAAAACAGGCTGACAGTTACTGCTTCTGTTTGGATGCCTGGAGCTCTACAATCTGCAATTCCTGTTAGTGTAGCAGGGATGACAAAGTTTGCTGATGAACAACATGCTTGGTCTGCTGAGTCACTTATTAGAAGATATGGTGATTCAATGGATTTGGTTACTCTCGTCAACTAG	1680	0.4018	MTEPASCSERTKKKKSQTLGEITIGIDIGTSPCSISIWNGFEIEVFKETLKEMIKSPREVFEDDAFSIGVSSEVTLSSEHEDTLFKLKRLFDIVDSDSAVYKSVNFPFLMHTLDIKVHPFIAAFVNKVWRSPTAVELLEKFLVELRLMVGAQLKRPIRNVVFAVPVSFSRLQLYRIHCACAKAGLKVIRTMPQPTAVALLYALDHSVSEISKMALIFNMDSGYCDVAVTAIAAGKCRIKALTGSSIGGEDLLGNMICHLVPDSVNRIKKRIHEDTEIKSMALLRCTIQEAITRLSSQTSVEVDLDMGDDLKIHKVVTREQFEEVNKEVFDKCERLIIQCLHDAKVEVDDINDVIIVGGCYNIPKVKNLVTKICKRKELYTYINPLEGAIYGAAVAGAIASGIRFMYGKLQLFDFHATLVAIGIRANGNNFVPVIPRNTSLPTTRHVACTTIHDNQNAALIVVYEGEGQKAEENHLLGYFKITEIPEASKGVPEINVCMEIDRENRLTVTASVWMPGALQSAIPVSVAGMTKFADEQHAWSAESLIRRYGDSMDLVTLVN	559

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa4g03683	559	Pfam	Hsp70 protein	24	516	IPR013126	GO:0005524\|GO:0140662
	Vifa4g03683	559	SUPERFAMILY	Heat shock protein 70kD (HSP70), peptide-binding domain	420	518	IPR029047	-
	Vifa4g03683	559	PRINTS	70kDa heat shock protein signature	491	507	-	-
	Vifa4g03683	559	PRINTS	70kDa heat shock protein signature	22	35	-	-
	Vifa4g03683	559	PRINTS	70kDa heat shock protein signature	382	402	-	-
	Vifa4g03683	559	PRINTS	70kDa heat shock protein signature	222	232	-	-
	Vifa4g03683	559	PRINTS	70kDa heat shock protein signature	350	366	-	-
	Vifa4g03683	559	PANTHER	HEAT SHOCK PROTEIN 70KDA	24	511	IPR013126	GO:0005524\|GO:0140662
	Vifa4g03683	559	CDD	HSP70_NBD	24	397	-	-
	Vifa4g03683	559	SUPERFAMILY	Actin-like ATPase domain	213	398	IPR043129	-
	Vifa4g03683	559	Gene3D	Actin; Chain A, domain 4	248	331	-	-
	Vifa4g03683	559	Gene3D	Substrate Binding Domain Of DNAk; Chain A, domain 1	410	545	IPR029047	-
	Vifa4g03683	559	SUPERFAMILY	Actin-like ATPase domain	23	205	IPR043129	-
	Vifa4g03683	559	Gene3D	-	24	396	-	-
	Vifa4g03683	559	Gene3D	-	85	140	-	-
	Vifa4g03683	559	FunFam	Heat shock 70 kDa protein 8	406	520	-	-
	Vifa4g03683	559	Gene3D	-	206	379	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa4g03683	Vifa-Chr4	1176195773	1176197452	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa4g03683	24	510	Calmodulin-binding Proteins	AT3G09440	33.333	3.37e-76	252

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa4g03683	K09489		-	gmx:100809773	599.356