Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03662 ATGGACCTTCATTTGACTCTCGCTCTCTCCAATTCTCTTGCTTACAATGCTTCTGGCAAGAGCAAGACTCATTTCCCTAATAAGAAGCGCAGTTTTTCCCAACTCTTGGAACTTGTAGAAGAAACGTCTAGTAACACCAACGTATCAGATGTTATGTTTCCCACTCTTTCTCTCCTCCCATTAACTCCACATCGACACTCAGATCATCATGACCATCAACACTCCTGTCACAGTTCCACTTCCACTATCACATTCCTTGAGAGAGGTGAAGATGTTGAAGAAGCTCTCATGGGTTGGCCTCCGGTTTATTATAGGAGTAAGAAGAAACTTCGCTATAATGAGGATCACGTGGTGTCAAGAAATTACGTGAAGGTGAAGATGGAGGGTGTAGGAATAGCTAGAAAAGTTAATCTCAGCACGTACAATTCATTTCAGACTCTCAACCAAACTTTGATGGACATGTTTGGAAAATGTGATGATGACCAAAAGTATGAACTGATTTATCAAGACCAAGAAGGTGATTGGCTTCTTGCTCAAGATGTTTCATGGAGAAGTTTCATTGATTGTGCCCAACGCCTCAAACTGCTCAAGAGCAGAGGATAG 603 0.4196 MDLHLTLALSNSLAYNASGKSKTHFPNKKRSFSQLLELVEETSSNTNVSDVMFPTLSLLPLTPHRHSDHHDHQHSCHSSTSTITFLERGEDVEEALMGWPPVYYRSKKKLRYNEDHVVSRNYVKVKMEGVGIARKVNLSTYNSFQTLNQTLMDMFGKCDDDQKYELIYQDQEGDWLLAQDVSWRSFIDCAQRLKLLKSRG 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03662 200 ProSiteProfiles PB1 domain profile. 120 200 IPR000270 GO:0005515
Vifa4g03662 200 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 5 198 IPR003311 GO:0005634|GO:0006355
Vifa4g03662 200 SUPERFAMILY CAD & PB1 domains 119 195 - -
Vifa4g03662 200 Gene3D - 116 200 - -
Vifa4g03662 200 Pfam AUX/IAA family 26 157 IPR033389 -
Vifa4g03662 200 Pfam AUX/IAA family 161 198 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03662 Vifa-Chr4 1164220416 1164222381 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03662 120 198 B3 DNA Binding Superfamily AT5G20730 34.524 8.33e-10 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vifa4g03662 AUX_IAA 4.4e-13 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03662 K14484 - gmx:100804096 172.17