Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03660 ATGGACCTTCATTTGAGTCTCACTCTTTCACATTCTCATGCCTATGATGCTGCTTGCAAGACTCATTTCCCTAATAACAAACGTAGTTTTTCCCAACTCTTGCAACATGCAGAAGAAACGTCTAGTAATACCAACGGATCAGATGTTATGTTTCCTACTCTTTCTCTTCTCCCATTAACTCCTGCCCACTCAGATCATCATGATTACGAACACTCCTCTCACAGTTCCACTTCCACCATCACCAAGACTAGTACCGGTGAGGATGATGAAGAAGCTCTCGTGGGTTGGCCTCCGGTTTATTATAGGAGAAAGAAACTTCGTTATAATGAGAATCACGTGGTGTCAAGAAATTACGTGAAGGTGAAGATGGAGGGTGTAGGAATAGCTAGAAAAGTTAATCTTAGCACGTACAATTCATTTCACACTCTTAACCAAACTTTGATGGACATGTTTGGGAAATGCACCTCAATAGGTAGTGTTGATCAAAAGTATGAACTGGTTTATCAAGACAAAGAAGGTGACTGGCTTCTTGCTCAAGATGTTTCATGGAGAAGTTTCATTGAGTGTGCCCAACGCCTCAAACTGCTCAAGAGCAGAGGATAA 603 0.4163 MDLHLSLTLSHSHAYDAACKTHFPNNKRSFSQLLQHAEETSSNTNGSDVMFPTLSLLPLTPAHSDHHDYEHSSHSSTSTITKTSTGEDDEEALVGWPPVYYRRKKLRYNENHVVSRNYVKVKMEGVGIARKVNLSTYNSFHTLNQTLMDMFGKCTSIGSVDQKYELVYQDKEGDWLLAQDVSWRSFIECAQRLKLLKSRG 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03660 200 ProSiteProfiles PB1 domain profile. 116 200 IPR000270 GO:0005515
Vifa4g03660 200 Gene3D - 112 200 - -
Vifa4g03660 200 MobiDBLite consensus disorder prediction 62 89 - -
Vifa4g03660 200 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 6 198 IPR003311 GO:0005634|GO:0006355
Vifa4g03660 200 Pfam AUX/IAA family 21 156 IPR033389 -
Vifa4g03660 200 Pfam AUX/IAA family 162 198 IPR033389 -
Vifa4g03660 200 SUPERFAMILY CAD & PB1 domains 115 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03660 Vifa-Chr4 1163664218 1163664984 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03660 116 198 B3 DNA Binding Superfamily AT1G19220 33.333 2.16e-09 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vifa4g03660 AUX_IAA 1.5e-15 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03660 K14484 - gmx:100804096 167.548