Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03640 ATGTCAAGCTGCAGTATCGATGTTGCACCTGCAGAACAACTCTGCTACATCCCTTGCAACTTTTGCAATATTGTTCTTGCGGTGAGTGTTCCATGCAGTAGCTTGTTTGACATAGTGACCGTTAGATGTGGTCACTGCACAAATCTATGGTCTGTGAACATGGCTGCAGCTTTTCAGTCACTTTCATGGCAAGATATTCAGGCACCTAGCCACTGCATGAATCCTGAGTATAGGATTAGAACCACTGGCAACACTTCCAAATGCAACGATAGGATTGCAATGAGAACTGCACCACCAACCACTCATGTTACTCAAGAAAGAGTTGTTAACCGCCCTCCCGAGAAGAGGCAGCGTGTACCTTCTGCTTATAATCAGTTCATAAAGGAAGAGATTCAGAGAATTAAGGCTAATAATCCTGATATTACTCACCGAGAAGCTTTCAGTACAGCTGCAAAGAATTGGGCTCATTTTCCTCATATTCATTTTGGGCTAATGTTGGAGAGCAACAATCAAGCTAAGATGGAGAATGTGTCTGAGAAACGTTTGAATTCGAGGGCTGCGCTAATGAACATGAACAAGTGA 582 0.433 MSSCSIDVAPAEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDIQAPSHCMNPEYRIRTTGNTSKCNDRIAMRTAPPTTHVTQERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDITHREAFSTAAKNWAHFPHIHFGLMLESNNQAKMENVSEKRLNSRAALMNMNK 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03640 193 CDD HMG-box_SF 118 154 - -
Vifa4g03640 193 SUPERFAMILY HMG-box 107 157 IPR036910 -
Vifa4g03640 193 PANTHER PROTEIN YABBY 6-RELATED 1 174 IPR006780 GO:0007275
Vifa4g03640 193 FunFam axial regulator YABBY 5-like 102 160 - -
Vifa4g03640 193 Pfam YABBY protein 10 164 IPR006780 GO:0007275
Vifa4g03640 193 Gene3D High mobility group box domain 103 183 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03640 Vifa-Chr4 1154734717 1154737664 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03640 7 174 C2C2-YABBY Transcription Factor Family AT2G26580 73.810 8.07e-88 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Vifa4g03640 YABBY 4.9e-70 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03640 K25796 - gmx:100804731 343.969