Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03639 ATGAAAAAGGGAAAAACATGGGAGAAACTTCAACTTGCTGCAAGGGTTATTGTTGCAATTGAGAATCCTCAGGATATTATTGTTCAATCTGCTAGACCTTATGGACAGAGAGCTGTTCTCAAATTTGCTCAATATACTGGTGCTCATGCTATCGCTGGAAGATACATTCCTGGAATTTTTACTAATCAGCTTCAAACTTCATTCAGCAAGCCGCGTCGTCTCATCCTCACTGACCCAAGAACTGATCACCAGCCAAGTAAAGAAGCAGCTCTTGGGTATATTCCCACAATTGCTTTCTGTGACACTGATTCTCCTATGCGATATGTTGACATTGGAATTCCTGCCAACAACAAAGGGAAGCATAGCATAGGTTGTCTCTTTTGGCTTTTGGCTAGAATGGTGTTGCAGATGCGTGGTACAATTCGCCCTGGTCTTAAATGGGATGTCATGGTGGATCTATTCTTCTATAGAGAACCAGAGGAGGCTAAACAGGAAGAGGAGGATGAAGTTCCAGCTCCAGACTATGCCATTGCTGACTTCAATGCAGCAGCTAACCCCATTGATGGTCAATAG 573 0.4328 MKKGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRYIPGIFTNQLQTSFSKPRRLILTDPRTDHQPSKEAALGYIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGLKWDVMVDLFFYREPEEAKQEEEDEVPAPDYAIADFNAAANPIDGQ 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03639 190 PANTHER 40S RIBOSOMAL PROTEIN SA 4 180 IPR005707 GO:0003735|GO:0006412|GO:0015935
Vifa4g03639 190 SUPERFAMILY Ribosomal protein S2 4 152 IPR023591 -
Vifa4g03639 190 PRINTS Ribosomal protein S2 signature 109 123 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa4g03639 190 PRINTS Ribosomal protein S2 signature 46 63 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa4g03639 190 PRINTS Ribosomal protein S2 signature 88 99 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa4g03639 190 PRINTS Ribosomal protein S2 signature 71 88 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa4g03639 190 CDD RPS2 5 136 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa4g03639 190 Gene3D - 1 171 - -
Vifa4g03639 190 FunFam 40S ribosomal protein SA 1 172 - -
Vifa4g03639 190 Pfam Ribosomal protein S2 68 134 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa4g03639 190 NCBIfam 30S ribosomal protein S2 4 158 IPR005707 GO:0003735|GO:0006412|GO:0015935
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03639 Vifa-Chr4 1152965755 1152966461 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03639 4 177 Cytoplasmic Ribosomal Protein Gene Family AT1G72370 82.514 1.61e-109 313
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03639 K02998 - gmx:100805318 338.576