Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03637 ATGAAAAAGGGAAAAACATGGGAGAAACTTCAACTTGCTGCAAGGGTTATTCTTGCAATTGAGAATCCTCAGGATATTATTGTTCAATCTGCTAGACCTTATGGACAGAGAGCTGTTCTCAAATTTGCTCAGTATACTGGTGCTCATGCTATCGCTGGAAGATACATTCCTGGAATTTTTACTAATCAGCTTCAAACTTCATTCAGCAAGCTGCGTCGTCTCATCCTCACTGACCCAAGAACTGATCACCAGCCAAGTAAAGAAGCAGCTCTTGGGAATATTCCCACAATTTCTTTCTGTGACACTGATTCTCCTATGCGATATGTTGACATTGGAATTCCTGCCAACAACAAAGGGAAGCATAGCATAGGTTGTCTCTTTTGGCTTTTGGCTAGAATGGTGTTGCAGATGCGTGGTACAATTCGCCCTGGTCTTAAATGGGATGTCATGGTGGATCTATTCTTCAATGCAGCAGCTAACCCCATTGATGGTCAGTAG 498 0.4257 MKKGKTWEKLQLAARVILAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRYIPGIFTNQLQTSFSKLRRLILTDPRTDHQPSKEAALGNIPTISFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGLKWDVMVDLFFNAAANPIDGQ 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03637 165 NCBIfam 30S ribosomal protein S2 4 156 IPR005707 GO:0003735|GO:0006412|GO:0015935
Vifa4g03637 165 PRINTS Ribosomal protein S2 signature 46 63 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa4g03637 165 PRINTS Ribosomal protein S2 signature 109 123 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa4g03637 165 PRINTS Ribosomal protein S2 signature 88 99 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa4g03637 165 PRINTS Ribosomal protein S2 signature 71 88 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa4g03637 165 FunFam 30S ribosomal protein S2 2 163 - -
Vifa4g03637 165 SUPERFAMILY Ribosomal protein S2 4 152 IPR023591 -
Vifa4g03637 165 PANTHER 40S RIBOSOMAL PROTEIN SA 4 156 IPR005707 GO:0003735|GO:0006412|GO:0015935
Vifa4g03637 165 CDD RPS2 5 136 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa4g03637 165 Gene3D - 1 164 - -
Vifa4g03637 165 Pfam Ribosomal protein S2 74 134 IPR001865 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03637 Vifa-Chr4 1152950359 1152950991 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03637 4 155 Cytoplasmic Ribosomal Protein Gene Family AT1G72370 88.158 2.76e-98 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03637 K02998 - gmx:548014 293.893