Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03629 ATGGTTCAATCAAAAAAGTTCAGAGGTGTCAGGCAGCGTCATTGGGGTTCTTGGGTTTCTGAAATTCGTCATCCACTTTTGAAGAGAAGGGTGTGGCTAGGAACATTTGAAACAGCTGAGGAAGCGGCAAGAGCTTATGATCAAGCAGCGATTTTAATGAGTGGTCGAAATGCGAAAACGAATTTCCCGATAACACAAACTCCGGAAGGTGATCCGAAGAGCAGTGTAATTACTGATAAGGACAAAAACTCGAGTTCTACAAAGGATCTAGAAGAAATCTTACACGCCAAGCTTCGAAAATGTGGCAAGTTACCATCTCCTTCCATGACTTGTTTAAGGTTAGACACAGAAAACTCTCACATTGGTGTGTGGCAAAAGCGTGCTGGGAAATGTTCTGATTCGAATTGGGTTATGACTGTTCATCTTGGAAAAAATAAGAGTGTGACTGAAAATATTGGTACCACTAGCACTAGTACTAGTACTGGTACTAGTACTAGTAGTAGTAGTGTTGTGCCCTACTCTTCGTCGGTCTTTGCGACCGGAGAGGAAATCATGCGAGGAGAGATTGATGAAGAGGATAGAATTGCACTTCAAATGATAGAAGAACTTCTCAATGACAAGAATTGTCCTAGCTCATCGGTTAACAATGTTAAACAAGGGGATGATATTCATAACAGCTTTTTTTTTTAA 690 0.4087 MVQSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAKTNFPITQTPEGDPKSSVITDKDKNSSSTKDLEEILHAKLRKCGKLPSPSMTCLRLDTENSHIGVWQKRAGKCSDSNWVMTVHLGKNKSVTENIGTTSTSTSTGTSTSSSSVVPYSSSVFATGEEIMRGEIDEEDRIALQMIEELLNDKNCPSSSVNNVKQGDDIHNSFFF 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03629 229 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 3 160 - -
Vifa4g03629 229 FunFam Ethylene-responsive transcription factor 2 5 64 - -
Vifa4g03629 229 CDD AP2 5 65 IPR001471 GO:0003700|GO:0006355
Vifa4g03629 229 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
Vifa4g03629 229 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Vifa4g03629 229 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Vifa4g03629 229 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Vifa4g03629 229 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Vifa4g03629 229 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Vifa4g03629 229 MobiDBLite consensus disorder prediction 61 88 - -
Vifa4g03629 229 MobiDBLite consensus disorder prediction 74 88 - -
Vifa4g03629 229 Pfam AP2 domain 6 54 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03629 Vifa-Chr4 1147986350 1147987142 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03629 1 205 AP2-EREBP Transcription Factor Family AT1G15360 59.906 2.23e-75 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vifa4g03629 AP2 9.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03629 - - gmx:100787517 316.235