Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03628 ATGGATGCCTATACTGCAACTGCCACCATCCTGCTGATCATGTACTTATCAGTACCAAATAATGGAGCTCAAACACATCCAAAACTACCAGAGCCGATAGCACCAGGTTCCTCACTTTCCCCTACTGGCAGTGATTACAACTCTTTATGGCTTTCCCCTTCTGTCCTATTTGCTTTTGGCTTTTATACACAAGACAACAATGGCTTTGTCGTTGGAATTTGGTTGGTTGGTAGTAGGACGATAGTATGGACTGCAAACCGTGATGACCCTCCAGTATCCTCAACTTCAAAGCTACAATTTACCATGAACGGTACATTGATACTAACTGATCAACATGGACAAGAGAAGCTTATTGTTAATGCTAATGCAAGAGCTTCCTCTGCATCCATGCTTGATTCTGGGAACTTTGTACTATATGACTACAATAATATTTCCAGAATCATATGGCAGAGTTTCGATCATCCAACTGATACTTTGTTGGAGGGTCAATCTCTACCATCCGGAAGCCAACTGACCTCTAGTTTATCAGAGACCAACAGCTCAACTGGAAGGTTTCGTCTCAACATGCAGGTTGATGGAAATCTTGTTTTGTATCCAGCATACACTACAGAATCGGGTTGGGATGCTTATTGGTCCTCTAACACTGCTAGTGTCAATGTCAAATATCATCTTTACCTCAACAATACAGGTTTACTACAGATCTTGGATAGCAACCGTGATTCTAGTCGTACTACCACTTTGTTTGATGCGGAAAAAAACCAGCAGAAGACTGGAGGAAACCAGACTATTATTTATCGTGCAACCCTGGATTTTGATGGGGTTTTTCGCCTGTATGCTCATCCAAATAATATTGCAAGTTACAAAATGATCACAAGTTGGCCTGGGAATAACCCATGTGAAGTAAAGGGGTTTTGTAGCTTCAACAGTTACTGCACATTCGATGACGACAAACCTTTATGCAACTGTCTCAAGGGATACAAATTTATAGATGAAAATGAAAAGACTCTTGGTTGCGAAAGGAACTATTCGAAAGTAGAGTGTAGAGGTAATAGTGATGGTGTGGCCTTTTATAACATAGTCCCGATGAACAATATTTTATGGGAGGACCATCCTTATTTTGAGACTCAAGATATGTCTTCGGAACAAGATTGCTCATCTGCTTGTTTGGTTGATTGCAACTGTTGGGCTGCACTTTATGATAGAGTAAGATGCAAGAAACAAGGGTTGCCTTTGAGATATGTCAGAAGGACACATGAAGATGACAAATTGACCACAGCGTTCTTAAAGGTGGGGAAAAACAGCATCGAAAACTGGAAGTGGAATGATACACTCTTCCCCCTACAACCATCACCACCTCCAATCAAGACTACCAGTAACGAAGCAGTGGTGCATATTATTGTTGTTACATCAATATTTACTGTACTTCTGGTTTCAGCAGTTGTTATATCCTGCCATTACATTTACAAGATTCGGGTATTGAGGTACAAAAGGTTAACGGACACTGGGAACATTGGGCTGAATGACGATGTGACATTGAGAAGGTTTTCGTATAACGAGCTGAAAAGAGCAACAAATCAGTTCAAGGAAGAGTTGGGTAAGGGATCTTTTGGATCTGTTTACAAAGGGACCTTAAACAGAGGTAATAGATTGATTGCAGTGAAGAGACTGGAGAAGGTGGTGGAAGAAGGGGAAAGGGAGTTTCAAGCAGAGGTGAGATCCATTGGGAAAACCCACCACAGGAACCTAGTTAGATTGCTGGGTTTTTGTGTTGAGGGTTCGAAAAGACTTCTGGTTTATGAGTACATGAGCAACAGTTCGCTTGGAAAGCTTCTCTTTGGTGATCAAAGACGTCCGGATTGGAATGAGAGAGTAAGAATAGCACTGGATATTGCAAGAGGAATTTTGTATCTCCATGAAGAGTGTGACGCTCCAATCATTCATTGTGACTTAAAGCCTCAAAACATTTTGATGGATGAGTTTTGGACCGCCAAGATATCGGATTTTGGGCTAGCAAAACTTTTAATGCCGGACCAAACCAGAACATTCACGATGGCCAGGGGTACAAGAGGGTATATGGCCCCGGAATGGAACAAGAACGTTCCAATATCAGTGAAAACAGATGTTTATAGCTATGGAATAGTGCTGTTGGAAATCTTATGTTGCAGAAGAAACATAGATGTTAATGTCTTGGAACCTGAGGAGGTTCTTCTTTCGGGTTGGGCCTATAAATGCTTTGTTTCAGGAGAGGTAAATAAGCTTGTACCTTGGGAAGTCATTGATAACAATGTAATGGAAAATATGATTAAGGTGGCACTGTGGTGTATCCAAGATGATCCTCTTCTCCGGCCAACAATGAAGGGTGTGGTGTTGATGTTAGAAGGGATTACTGATGTAGCAGTTCCTCCTTGTCCAGATTCCAGTTCTGCATGA 2430 0.4148 MDAYTATATILLIMYLSVPNNGAQTHPKLPEPIAPGSSLSPTGSDYNSLWLSPSVLFAFGFYTQDNNGFVVGIWLVGSRTIVWTANRDDPPVSSTSKLQFTMNGTLILTDQHGQEKLIVNANARASSASMLDSGNFVLYDYNNISRIIWQSFDHPTDTLLEGQSLPSGSQLTSSLSETNSSTGRFRLNMQVDGNLVLYPAYTTESGWDAYWSSNTASVNVKYHLYLNNTGLLQILDSNRDSSRTTTLFDAEKNQQKTGGNQTIIYRATLDFDGVFRLYAHPNNIASYKMITSWPGNNPCEVKGFCSFNSYCTFDDDKPLCNCLKGYKFIDENEKTLGCERNYSKVECRGNSDGVAFYNIVPMNNILWEDHPYFETQDMSSEQDCSSACLVDCNCWAALYDRVRCKKQGLPLRYVRRTHEDDKLTTAFLKVGKNSIENWKWNDTLFPLQPSPPPIKTTSNEAVVHIIVVTSIFTVLLVSAVVISCHYIYKIRVLRYKRLTDTGNIGLNDDVTLRRFSYNELKRATNQFKEELGKGSFGSVYKGTLNRGNRLIAVKRLEKVVEEGEREFQAEVRSIGKTHHRNLVRLLGFCVEGSKRLLVYEYMSNSSLGKLLFGDQRRPDWNERVRIALDIARGILYLHEECDAPIIHCDLKPQNILMDEFWTAKISDFGLAKLLMPDQTRTFTMARGTRGYMAPEWNKNVPISVKTDVYSYGIVLLEILCCRRNIDVNVLEPEEVLLSGWAYKCFVSGEVNKLVPWEVIDNNVMENMIKVALWCIQDDPLLRPTMKGVVLMLEGITDVAVPPCPDSSSA 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03628 809 ProSiteProfiles Protein kinase domain profile. 525 795 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g03628 809 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 602 800 - -
Vifa4g03628 809 Pfam Protein kinase domain 527 788 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g03628 809 SUPERFAMILY alpha-D-mannose-specific plant lectins 181 278 IPR036426 -
Vifa4g03628 809 FunFam S-receptor-like serine/threonine-protein kinase 496 601 - -
Vifa4g03628 809 SUPERFAMILY Protein kinase-like (PK-like) 511 793 IPR011009 -
Vifa4g03628 809 Gene3D Transferase(Phosphotransferase) domain 1 602 800 - -
Vifa4g03628 809 SMART serkin_6 525 792 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g03628 809 ProSitePatterns Serine/Threonine protein kinases active-site signature. 645 657 IPR008271 GO:0004672|GO:0006468
Vifa4g03628 809 PIRSF SRK 2 809 IPR024171 GO:0004674
Vifa4g03628 809 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 42 805 - -
Vifa4g03628 809 Gene3D Phosphorylase Kinase; domain 1 494 601 - -
Vifa4g03628 809 Gene3D - 156 291 IPR036426 -
Vifa4g03628 809 Pfam D-mannose binding lectin 80 165 IPR001480 -
Vifa4g03628 809 ProSiteProfiles Bulb-type lectin domain profile. 30 151 IPR001480 -
Vifa4g03628 809 SUPERFAMILY alpha-D-mannose-specific plant lectins 71 198 IPR036426 -
Vifa4g03628 809 CDD STKc_IRAK 531 795 - -
Vifa4g03628 809 ProSitePatterns Protein kinases ATP-binding region signature. 531 554 IPR017441 GO:0005524
Vifa4g03628 809 ProSiteProfiles Bulb-type lectin domain profile. 156 290 IPR001480 -
Vifa4g03628 809 FunFam Serine/threonine-protein kinase 155 288 - -
Vifa4g03628 809 Gene3D - 33 154 IPR036426 -
Vifa4g03628 809 CDD B_lectin 42 155 IPR001480 -
Vifa4g03628 809 SMART blect_4 40 155 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03628 Vifa-Chr4 1146632413 1146634842 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03628 446 798 Receptor kinase-like Gene Family AT1G56120 42.618 8.54e-68 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vifa4g03628 Pkinase 1.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03628 - - gmx:100815958 978.778