Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03626 ATGAGCAATGGTTCACTTGGAAAGCTTCTATTTGGTGATCAAAGACGTCCAGATTGGGATGAGAGAGTAAAAATAGCACTGGATATTGCTCGAGGGATGTTGTATCTCCATGAAGAATGCGAGGCACCGATCATTCATTGTGACATAAAGCCTCAAAACATTTTGCTGGATGAGTTTTGGACCGCTAAGATATCTGATTTTGGTCTTGTAAAACTTCTAATGCCAGACCAAACCAGAACTTTCACGGTTAGAGGGACAAGAGGCTATATGGCTCCGGAATGGAGCAAGAACATGCCAATATCACTGAAGGCAGATGTTTATAGCTATGGAACAATGCTGTTGGAAATTTTGTGTTGCAGAAAAAACCTAAATGTTAATGTGTTGGAACCTGACGAGATTCTTCTCTCTACTTGGGCTTATGAGTGCTTTATTGCAGGAGAGGTGAATAAGCTTGTACCCTGGGAAGTCATTGATAACAATGTCATGGAAAATATGATTAAGGTGGCACTTTGGTGTATCCAAGATGATCCTCTTCTCCGGCCAACAATGAAGGGTGTGGTGTTGATGTTAGAAGGAGTCACTGATATAGCAATTCCTCCTTGTCCAGATCCCAATCCTGCATAG 624 0.4183 MSNGSLGKLLFGDQRRPDWDERVKIALDIARGMLYLHEECEAPIIHCDIKPQNILLDEFWTAKISDFGLVKLLMPDQTRTFTVRGTRGYMAPEWSKNMPISLKADVYSYGTMLLEILCCRKNLNVNVLEPDEILLSTWAYECFIAGEVNKLVPWEVIDNNVMENMIKVALWCIQDDPLLRPTMKGVVLMLEGVTDIAIPPCPDPNPA 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03626 207 Pfam Protein kinase domain 4 186 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g03626 207 SMART serkin_6 1 190 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g03626 207 Gene3D Transferase(Phosphotransferase) domain 1 1 197 - -
Vifa4g03626 207 SUPERFAMILY Protein kinase-like (PK-like) 1 191 IPR011009 -
Vifa4g03626 207 ProSitePatterns Serine/Threonine protein kinases active-site signature. 44 56 IPR008271 GO:0004672|GO:0006468
Vifa4g03626 207 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 1 198 - -
Vifa4g03626 207 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 1 203 - -
Vifa4g03626 207 ProSiteProfiles Protein kinase domain profile. 1 198 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03626 Vifa-Chr4 1146416007 1146416630 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03626 18 200 Receptor kinase-like Gene Family AT5G20050 37.629 3.89e-41 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vifa4g03626 Pkinase 3.7e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03626 - - ahf:114924106 362.459