Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03612 ATGGCTTCGAGATTCTGGAACCAGGCTGGTAGTGATTCTGAAGATGAAGATAGTGATTACGATGAGGAGGTTGAAGAAACAGCAGGTGAATCTGGTCCTGATCCTACTAAAACCAATTACTACCTTCAAGGTAATGCTAGCGACAGCGATGACTCTGATGGCCAAAAGCGTGTTGTTAGATCGGCGAAAGATAAAAGATTCGAAGAGATGGCTTCGACTGTTGATCAGATGAAGAATGCAATGAAGATTAACGATTGGGTGAGTTTGCAAGAGAGTTTTGACAAGATTAACAAACAGCTTGAGAAAGTCATGCGTGTGGCGGAGACTGATAAGGTTCCTAGTCTTTATATTAAGGCTCTTGTTATGTTGGAGGATTTCTTGGCTCAGGCTTTGGCGAATAAGGATGCTAAGAAGAAGATGAGTAGTAGTAATGCGAAAGCTTTGAACTCGATGAAGCAAAAATTGAAGAAGAATAATAAGCAATATGAGGAGCTGATTAATAAGTGTAGGGAGAGTCCGGGGAGTGAGGAGGAAAAGGATGATGATGAGGAGAGCGAGGAAGAAGATGACAGTGATGGTGATATTATTGAGCCTGAACAGCTTCGGAAGCGGGAACTTAAATCGGATTCGGAAGTCGAGTACGAAGATGGAAAGGAAGATGCTGGTGAAGGAGGTTGGGACCAGAAGCTTAGCAAGAAAGATAGACTTTTGGATAGACAGCTCATGAAAGATCCAAGGGAGGTTACATGGGATATCGTTAACAAGAAGTTTAAGGAGATTGTGGCGGCTAGAGGTAGGAAGGGAACTGGGAGATTTGAACAGGTCGAGCAGCTTACCTTCTTAACAAAAGTGGCTAAAACACCTGCACAGAAGCTTGAGATTCTTTTCAGTGTGGTTTCTGCTCAGTTTGATGTTAATCCAGGCCTCAGTGGCCATATGCCAATAACTGTGTGGAAAAAGTGTGTTCAGAATATGCTGCTCATCCTTGATATTCTAGTTCAGTTTCCAAACATAAAGGTTGACGATTCAGTGGAGCCAGATGAAAATGAAACTCAGAAAGGGGCTGACTTTGATGGACCAATTAGGGTTTGGGGTAACTTAGTTGCTTTCTTAGAAAAAATAGATACCGAGTTTTTCAAGAGCTTGCAGTGCATAGATCCTCATACAGGTGAGTATGCTGCGAGACTCAAGGATGAGCCCTTGTTTTTGGTTCTTGCTCAAAATGTCCAGGAATATCTTGAAAGTAGTGGGGATTTCAAAGCATCTTCTAAGGTAGCCTTGCGGAGGGTTGAACTCATTTACTACAAACCACAAGAGGTTTATGATGCTATGAGAAAATTGGCTGATCTGCCCGAAGATGGAGAGAATGAAGGGGAGGCGAGCGAGGAGTCAAAAGGGTTTGAGGATACAAGAATTCCTACTGCATTTGTTGTCACTCCTGAGCTTGTGGCTCGGAAACCCACCTTCCCGGAGAATAACAGGACTCTAATGGATGTTTTAGTTTCACATATATACAAACATGGCGATGAGCGCACTAAAGCTCGGGCAATGCTTTGTGATATATATCACCACGCTCTTCTTAATGAATTCTCAGTAGCTCGTGATCTGCTGCTTATGAGTCATTTGCAAGAAAATGTTCAGCACATGGACATTTCAACACAGATACTTTTTAACAGGGCTATGTCACAGTTAGGTCTATGTGCTTTTCGGGTTGGATTGATTTCTGAAGCACATGGCTGTCTATCTGAACTTTATTCAGGTGGAAGGGTGAAAGAGTTGCTTGCACAAGGTGTGTCACAAAGTCGTTATCATGAAAAGACTGCAGAACAGGAAAGGTTGGAAAGAAGAAGACAGATGCCGTATCATATGCACATAAATCTTGAGCTCCTGGAAGCAGTGCATCTTATATCTGCTATGCTGCTGGAGGTTCCCAATATGGCAGCCAATGTTCATGATGCAAAGCATAGGGTCATCAGTAAGAATTTCCGCCGCTTGCTAGAGGTCAGTGATAAACAAACATTCACCGGTCCTCCTGAGAGTGTCAGAGATCACATTATGGCTGCCACGAGGGTTCTTATTAAAGGAGACTTCAATAAGGCTTTTGACATTATTACCTCTCTTGATGTATGGAAATTTGTGAAAAATCGAGAAACTGTATTGGAAATGCTCAAGGACAAAATCAAGGAGGAGGCCCTTAGGACATATCTCTTAACCTTCTCTTCATCCTATGAGTCTTTGAGTGTGGATCAAGTCACGGAATTTTTCGACCTCTCTGTCCCTCGCACTCATAGCATTGTGAGCAGGATGATGATCAATGAGGAGCTTCATGCAAGCTGGGACCAGCCAACTGGGTGCATTGTTTTCCAAAATGTTGAGCACTCTAGGCTGCAAGCATTGGCATTCCAGTTGACAGATAAATTATCTATCCTTGCAGAGAGTAATGAGAGAGCCACAGAGGCAAGATTAGGTGGTGGATTAGATCTACCTCCGAGACGGAGGGATGGCCAGGACTATGCTGCTGCTGCTGGCGGTGGTAGTGGGACAGGGTCTTTAGGTGGTAGATGGCAAGACTTGTCCCATTCTCAGCCACGGCAAGGGAGTGGACGTGGAGGATATGGTAATGCCGGTGGAAGGCCATTGGCATATGGTCAAGCGGCTAGGAGTGGAGGCTATTCAAGGGATCGAACGGGTCGTGGAACAGGTGGTGGTTATCAGAGTTCAGGGAGGGCTACTCAAGGGGGTTCAGGACTGAGGGGATCCCTGGGCGATGTATCTACTCGCATGGTTAGCCTTAAGGGACGCGCTTAA 2808 0.4459 MASRFWNQAGSDSEDEDSDYDEEVEETAGESGPDPTKTNYYLQGNASDSDDSDGQKRVVRSAKDKRFEEMASTVDQMKNAMKINDWVSLQESFDKINKQLEKVMRVAETDKVPSLYIKALVMLEDFLAQALANKDAKKKMSSSNAKALNSMKQKLKKNNKQYEELINKCRESPGSEEEKDDDEESEEEDDSDGDIIEPEQLRKRELKSDSEVEYEDGKEDAGEGGWDQKLSKKDRLLDRQLMKDPREVTWDIVNKKFKEIVAARGRKGTGRFEQVEQLTFLTKVAKTPAQKLEILFSVVSAQFDVNPGLSGHMPITVWKKCVQNMLLILDILVQFPNIKVDDSVEPDENETQKGADFDGPIRVWGNLVAFLEKIDTEFFKSLQCIDPHTGEYAARLKDEPLFLVLAQNVQEYLESSGDFKASSKVALRRVELIYYKPQEVYDAMRKLADLPEDGENEGEASEESKGFEDTRIPTAFVVTPELVARKPTFPENNRTLMDVLVSHIYKHGDERTKARAMLCDIYHHALLNEFSVARDLLLMSHLQENVQHMDISTQILFNRAMSQLGLCAFRVGLISEAHGCLSELYSGGRVKELLAQGVSQSRYHEKTAEQERLERRRQMPYHMHINLELLEAVHLISAMLLEVPNMAANVHDAKHRVISKNFRRLLEVSDKQTFTGPPESVRDHIMAATRVLIKGDFNKAFDIITSLDVWKFVKNRETVLEMLKDKIKEEALRTYLLTFSSSYESLSVDQVTEFFDLSVPRTHSIVSRMMINEELHASWDQPTGCIVFQNVEHSRLQALAFQLTDKLSILAESNERATEARLGGGLDLPPRRRDGQDYAAAAGGGSGTGSLGGRWQDLSHSQPRQGSGRGGYGNAGGRPLAYGQAARSGGYSRDRTGRGTGGGYQSSGRATQGGSGLRGSLGDVSTRMVSLKGRA 935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03612 935 ProSiteProfiles PCI domain profile. 621 793 IPR000717 -
Vifa4g03612 935 PANTHER EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED 1 931 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Vifa4g03612 935 Pfam PCI domain 661 789 IPR000717 -
Vifa4g03612 935 MobiDBLite consensus disorder prediction 1 64 - -
Vifa4g03612 935 MobiDBLite consensus disorder prediction 818 935 - -
Vifa4g03612 935 Hamap Eukaryotic translation initiation factor 3 subunit C [EIF3C]. 2 871 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Vifa4g03612 935 MobiDBLite consensus disorder prediction 50 64 - -
Vifa4g03612 935 MobiDBLite consensus disorder prediction 899 914 - -
Vifa4g03612 935 MobiDBLite consensus disorder prediction 136 155 - -
Vifa4g03612 935 MobiDBLite consensus disorder prediction 156 175 - -
Vifa4g03612 935 MobiDBLite consensus disorder prediction 12 29 - -
Vifa4g03612 935 MobiDBLite consensus disorder prediction 176 195 - -
Vifa4g03612 935 MobiDBLite consensus disorder prediction 135 227 - -
Vifa4g03612 935 MobiDBLite consensus disorder prediction 32 49 - -
Vifa4g03612 935 MobiDBLite consensus disorder prediction 196 227 - -
Vifa4g03612 935 MobiDBLite consensus disorder prediction 852 868 - -
Vifa4g03612 935 Pfam Eukaryotic translation initiation factor 3 subunit 8 N-terminus 45 653 IPR008905 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Vifa4g03612 935 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 722 810 IPR000717 -
Vifa4g03612 935 SUPERFAMILY "Winged helix" DNA-binding domain 720 792 IPR036390 -
Vifa4g03612 935 Coils Coil 145 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03612 Vifa-Chr4 1144199732 1144202739 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03612 1 931 Eukaryotic Initiation Factors Gene Family AT3G56150 66.843 0.0 1168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03612 K03252 - gmx:100779751 1431