Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03605 ATGGCATGGTCTGATTCAACTACTCAGAAACAATCTCGTCCTTCTCAACCGCTTTACGTTCCTCAATTCCGTTCCAACACCACCAACATTCCTCCTCCCTACAACAATCGAGCCCATTTTCCTCCATCGGATGATGTTTCATCTCACTACGCTTTCAATCGCTCCACTCACAGGCCACGTGGCAGAGGCGGTTACGGTTATGGCCATGGTCCTCCGCGTCATTTCCCTCGACCGGAACAACAACAACAACAACCACGGAACTTCAACTACAACCACGATCCTCATCCTCCTCATCGGAACAATCGCCCTCCGATTGAGACCCACACTGAACCACAGAACGGCGTCGTTGCGAATGCGAATGCGAATTTCGAAGCGTATGAATCTATCCCCGTTGAGGCTACCGGAGAGAACGTGCCTCCGCCGGTGAATGTGTTTGCTGAAACCGAACTTCACGAGGATTTGAAGAATAACATTGAGAGATGTAAGTATGTGAAACCTACTCCAGTTCAGCGGTACGCGATCCCCATTGCTGTTGCTGGGAGAGACCTTATGGCTTGTGCTCAGACTGGCTCGGGTAAAACGGCGGCGTTTTGTTTTCCGATTATATCTGGGATTATGAAAGATCGTTTAGCTTCTGGGTTGGTGCCGTCTATGCCACGTGGCGGTGGTTCCGATGTTGCGTACCCCACTGCACTCATCTTGTCTCCAACTAGGGAGTTATCATGCCAGATACATGCTGAAGCAACCAAGTTTGCTTATCAAACAGGAGTGAAGATTGCGGTTGCTTATGGGGGTGCTCCTATTGGTCAACAGTTAAGGGTTTTGGAGAGAGGTGTTGATATTTTGGTTGCGACTCCTGGGCGATTGGTGGATATGATTGAGAGAGAAAGGGTTTCTTTGAAGAAGATTAAATATCTTGCTCTGGATGAGGCTGATCGGATGCTAGACATGGGTTTTGAGCATCAGATTCGCAACATTGTTCAGCAGATGAACATGCCTCCTCCGGGAGATAGACAGACATTGCTTTTTAGTGCTACCTTTCCCGATAATATACAGAAGCTTGCATCTGATTTTTTGTCAAACTATGTGTTCTTGGCTGTTGGAAGGGTTGGTTCAAGCACTGAACTGATTGTACAGAAAATTGAATCTGTACAGGATATGGAGAAAAGAAATCGTCTTGTGGATCTTCTTCAACGCAATGTTGTCAATGGGAAGCTGGCTTTATCTCTTATATTTGTTGAAACAAAGAAAGGAGCAGATGCTTTAGAAAGTTGGCTTTGCAGAAGTGGTTTTCCAGCTATTGCAATACATGGTGACAAGGTTCAAATGGAGCGGGAGCGAGCATTGAGATCTTTTAAACGCGGTCTTACTCCAATAATGGTTGCAACAGACGTTGCTTCTCGAGGATTGGATATACCTCACGTGGCTCATGTGATTAACTTTGACTTGCCGAGAGACATTGATGACTATGTACATAGAATTGGTAGAACAGGCCGTGCTGGTCAGTCTGGTTTAGCAACTGCTTTCTTCAGCAGCAAAAACATGCCTCTTGCAAAGGGTCTTGTTGGACTTTTGCAAGAAGCAAAACAAGAAGTCCCTTCTTGGCTATTACAATATTCCGAGTCTTCTGCACCAGGTGGGCGCAGCAGCCATGGATCCCAACGGTCGCCTTGGAGAAACAACTACGGAGGGCGCGATTTCCGGACTGCAGCTGAACCTGTAATGGTGGAGAGTTACAACAACTACAACAGTAGTTACAGCAATTATGGTGGTAATGGTTTCCATAATGTTCCCGAACAGGTGCAGAATTACAACTACAACAGCTCCTACAGCAACAGAGACCATACTGCCAATAATTATACTGGCAGTGATGGAATAAATGGGCCATGTGGTTATGCATCTGTTGTGCCTACCGGATGGGACTAA 1926 0.4642 MAWSDSTTQKQSRPSQPLYVPQFRSNTTNIPPPYNNRAHFPPSDDVSSHYAFNRSTHRPRGRGGYGYGHGPPRHFPRPEQQQQQPRNFNYNHDPHPPHRNNRPPIETHTEPQNGVVANANANFEAYESIPVEATGENVPPPVNVFAETELHEDLKNNIERCKYVKPTPVQRYAIPIAVAGRDLMACAQTGSGKTAAFCFPIISGIMKDRLASGLVPSMPRGGGSDVAYPTALILSPTRELSCQIHAEATKFAYQTGVKIAVAYGGAPIGQQLRVLERGVDILVATPGRLVDMIERERVSLKKIKYLALDEADRMLDMGFEHQIRNIVQQMNMPPPGDRQTLLFSATFPDNIQKLASDFLSNYVFLAVGRVGSSTELIVQKIESVQDMEKRNRLVDLLQRNVVNGKLALSLIFVETKKGADALESWLCRSGFPAIAIHGDKVQMERERALRSFKRGLTPIMVATDVASRGLDIPHVAHVINFDLPRDIDDYVHRIGRTGRAGQSGLATAFFSSKNMPLAKGLVGLLQEAKQEVPSWLLQYSESSAPGGRSSHGSQRSPWRNNYGGRDFRTAAEPVMVESYNNYNSSYSNYGGNGFHNVPEQVQNYNYNSSYSNRDHTANNYTGSDGINGPCGYASVVPTGWD 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03605 641 SMART ultradead3 162 380 IPR014001 -
Vifa4g03605 641 FunFam Probable ATP-dependent RNA helicase DDX4 106 367 - -
Vifa4g03605 641 Pfam DEAD/DEAH box helicase 167 354 IPR011545 GO:0003676|GO:0005524
Vifa4g03605 641 CDD SF2_C_DEAD 377 510 - -
Vifa4g03605 641 Gene3D - 367 543 IPR027417 -
Vifa4g03605 641 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 230 515 IPR027417 -
Vifa4g03605 641 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 143 171 IPR014014 GO:0003724
Vifa4g03605 641 SMART helicmild6 420 501 IPR001650 -
Vifa4g03605 641 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 400 540 IPR001650 -
Vifa4g03605 641 MobiDBLite consensus disorder prediction 1 34 - -
Vifa4g03605 641 Gene3D - 103 366 IPR027417 -
Vifa4g03605 641 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 113 539 - -
Vifa4g03605 641 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 174 365 IPR014001 -
Vifa4g03605 641 MobiDBLite consensus disorder prediction 1 110 - -
Vifa4g03605 641 FunFam ATP-dependent RNA helicase RhlB 368 544 - -
Vifa4g03605 641 CDD DEADc_DDX3_DDX4 145 371 IPR044763 GO:0003724|GO:0005524
Vifa4g03605 641 MobiDBLite consensus disorder prediction 541 560 - -
Vifa4g03605 641 MobiDBLite consensus disorder prediction 541 562 - -
Vifa4g03605 641 Pfam Helicase conserved C-terminal domain 389 501 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03605 Vifa-Chr4 1140359580 1140362431 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03605 141 521 Eukaryotic Initiation Factors Gene Family AT3G19760 32.461 4.83e-60 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03605 K11594 - gmx:100817549 707.597
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g03605 4 1140359580 1140362431 Vifa4g03605 4 1140359580 1140362431 ECH