Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03596 ATGGATGAAGATTTACTCAAACGCAACACCGATTGCGTTTATTTCTTGGCTTCACCCCTCACTTGCAAGAAGGGTGTAGAGTGTGAGTATAGGCACCATGAGATTGCGAGGCTTAACCCGAGGGATTGCTGGTACTGGTTATCGGGGAATTGTCTTAATCCGACTTGTGCTTTTAGACACCCTCCATTGGATGTGCATGCTGGAGTGCCATCTGAACCTATACAACAATCTGCAGTACCTGCATCTGCAAACAAGACAATGGTTCCCTGTTATTTTTTCTTCAATGGGTTTTGCAACAAAGGTAGCAAATGCTCATTTTCACATAAGCCTGATGATAGCTTGCTCGTTGTAAAGCCTTCGAAGAATGACACTGTAAAGCCTTTGAAAAATGACACTGTAAAGCCTTTGAAGATTGACACTGTAAAGCCTTTGAAGAATGACACTGTAAAACCTTTGAAGAATGACACCGTAAAGCCTTTGAAGAATGACACTGTAAAGCCTTTGAAGAATGACACTGTAAAGCCTTTGAAGAATGGCAACGGAAGCATTAATGCACTCCACTTAGAAAATAAAGCTTCATCAGGAAATAAAACATCTGTAGCATCAACACCAAGGGAAACACACTTTGAGCAATCTTTATCTGCTCCAAAAGCTTTGTCTGATATTAAACTTAAGACTAAGGAAGATCTTCAGCTACCATTACCCGAAAATGTTAAACAGGAAAGTGTTTTCTTGGAACTTTCTTCATTTGACTATAAAGAAGCTGCTGTGACTACTCAGTCAGACTCTCTGGTACCCGACAATGGTTTTGCTCATAATATGTCTCATTCATGCTCTGAGCAGAGTTCGGAGGAGCAGGAAAATTGTCATGTAGAGCCTGAGGAACGGTGGGAATCCTCCCCTGGATTTGATGTTCTTGTTCATGATGAATCCGAGAACCTGGGTTATGAGAATGGTTCTGAATATTTGCCGCTGCTTGATATGGATGACCACGAACTGAATGAGCCTTATACCGGGTATGAATTTAAAAATACAGATGAGTACGACACCATCTGCTCAGATGCTGAAATTCTGTATGAACAGGGAACATGTGATGATTACAGATGTTTTGATCGAGATTTTTCCAGTGAAAGGGAAGTTTGTGGTTATTCCGGAGAGATAGCATTGGATTCTATATTTTCCAGGAAAAGGGTTCGGATGTCAGCTGCTGAGATGGATGCTTGTGACTCTGACTTAGATCTACGTCACCATTTGAGAAGACGCAGGGAGGTCAATGATCCTCCTGTCACTGGTTTCTTAAGAAGACAGGATGAACCATCTTCTTTGATGGTTCGAAACCAGGAAAGGCATCTTCCGCGACAAAATAGAAGATTAACATCACAGTTAGGATTTAGTTCAATCAGAGAGGTTGAAGATCTTTCAATTGCTAACAATAACAATCACATGTTATTTAGGCCTTCTCAGCAAAATAGGCCTTCCCAGCAAAATAGGCCTTCCCAGCAAAATAGGCCAAGAAAGCATTATAGAGAAAAACCAGCTAGACGGCCATTTCCTTCATCTAAAGTATCCAGGAAACCAGTTGTAAAGCAACAGAGAGTTATCAAGGAATCCAGTACATTTTCAGGGCCCAAGACTCTTGCAGAATTAAAAGAAGAAAGGAAGAAGGCTGGTGAAAGTTCACACTGTGAAAGCTCATCAGCTGGTTTCCAGGATCCCAAACCACTGCATGAAATTCTCAAAGACAGAGGGACCATGGACTGA 1761 0.4151 MDEDLLKRNTDCVYFLASPLTCKKGVECEYRHHEIARLNPRDCWYWLSGNCLNPTCAFRHPPLDVHAGVPSEPIQQSAVPASANKTMVPCYFFFNGFCNKGSKCSFSHKPDDSLLVVKPSKNDTVKPLKNDTVKPLKIDTVKPLKNDTVKPLKNDTVKPLKNDTVKPLKNDTVKPLKNGNGSINALHLENKASSGNKTSVASTPRETHFEQSLSAPKALSDIKLKTKEDLQLPLPENVKQESVFLELSSFDYKEAAVTTQSDSLVPDNGFAHNMSHSCSEQSSEEQENCHVEPEERWESSPGFDVLVHDESENLGYENGSEYLPLLDMDDHELNEPYTGYEFKNTDEYDTICSDAEILYEQGTCDDYRCFDRDFSSEREVCGYSGEIALDSIFSRKRVRMSAAEMDACDSDLDLRHHLRRRREVNDPPVTGFLRRQDEPSSLMVRNQERHLPRQNRRLTSQLGFSSIREVEDLSIANNNNHMLFRPSQQNRPSQQNRPSQQNRPRKHYREKPARRPFPSSKVSRKPVVKQQRVIKESSTFSGPKTLAELKEERKKAGESSHCESSSAGFQDPKPLHEILKDRGTMD 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03596 586 PANTHER ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING 1 584 - -
Vifa4g03596 586 ProSiteProfiles Zinc finger C3H1-type profile. 6 35 IPR000571 GO:0046872
Vifa4g03596 586 MobiDBLite consensus disorder prediction 483 501 - -
Vifa4g03596 586 ProSiteProfiles Zinc finger C3H1-type profile. 84 111 IPR000571 GO:0046872
Vifa4g03596 586 MobiDBLite consensus disorder prediction 193 214 - -
Vifa4g03596 586 MobiDBLite consensus disorder prediction 149 170 - -
Vifa4g03596 586 SMART c3hfinal6 39 62 IPR000571 GO:0046872
Vifa4g03596 586 SMART c3hfinal6 7 34 IPR000571 GO:0046872
Vifa4g03596 586 SMART c3hfinal6 84 110 IPR000571 GO:0046872
Vifa4g03596 586 Gene3D - 3 64 - -
Vifa4g03596 586 Gene3D - 75 142 - -
Vifa4g03596 586 ProSiteProfiles Zinc finger C3H1-type profile. 37 63 IPR000571 GO:0046872
Vifa4g03596 586 MobiDBLite consensus disorder prediction 546 560 - -
Vifa4g03596 586 MobiDBLite consensus disorder prediction 483 586 - -
Vifa4g03596 586 Pfam RNA-binding, Nab2-type zinc finger 89 108 - -
Vifa4g03596 586 MobiDBLite consensus disorder prediction 149 181 - -
Vifa4g03596 586 FunFam Zinc finger CCCH domain-containing protein 17 1 63 - -
Vifa4g03596 586 SUPERFAMILY CCCH zinc finger 84 109 IPR036855 GO:0046872
Vifa4g03596 586 Pfam Zinc-finger containing family 7 63 IPR041686 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03596 Vifa-Chr4 1135981209 1135984231 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vifa4g03596 zf-CCCH_3 2e-11 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03596 - - mtr:11438142 831.632
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g03596 4 1135981209 1135984231 Vifa4g03596 4 1135981209 1135984231 ECH