Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03590 ATGACTTATCCAGACAACATTCCAACCTTTAGGATGTCACCGCCGCAATTCGCCTCATCCAACATTGATATCAATAAAGTGAGGCCTCAATTCCCAATGAACAATGAACGATTTGAACCGCGTTCAGCAATGCAGCCACCACCAAACTGGCAGGAGCTTGTCCGTCCTCGTACTGAAAAAAAGCTGCAATTGAGCGGGAATAGGAGTGATGATCATAAAATCATTCACAAGACGAAGCTGTGCAAGAAGTATTACTGTGGTGAGCAATGCCCTTATGGTGATAATTGTAGCTTTCTTCACGAGGATCCTGCTAAGTTTGGAGACGATTCTTGGAAAACAAGAAGAGAGACATCTTCAATCAGCATTGGAACTATTGGTAATAATTTGGAAGACAATAAGACTATGACCAAGCCACCTAGGGGCACTTATTGGAAGACTAAGCCGTGTCTCAAGTGGAAGCATACCCGGAGCTGCCCCTTTGGTGATGACTGTGACTTTGCTCATGGAGATGCAGGTGTTGTTTCAGTTGTTAAGTAA 537 0.4395 MTYPDNIPTFRMSPPQFASSNIDINKVRPQFPMNNERFEPRSAMQPPPNWQELVRPRTEKKLQLSGNRSDDHKIIHKTKLCKKYYCGEQCPYGDNCSFLHEDPAKFGDDSWKTRRETSSISIGTIGNNLEDNKTMTKPPRGTYWKTKPCLKWKHTRSCPFGDDCDFAHGDAGVVSVVK 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03590 178 PANTHER CCCH ZINC FINGER/TIS11-RELATED 137 170 IPR045877 GO:0003729
Vifa4g03590 178 SUPERFAMILY CCCH zinc finger 142 170 IPR036855 GO:0046872
Vifa4g03590 178 ProSiteProfiles Zinc finger C3H1-type profile. 143 171 IPR000571 GO:0046872
Vifa4g03590 178 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 144 169 IPR000571 GO:0046872
Vifa4g03590 178 Gene3D - 72 103 - -
Vifa4g03590 178 Gene3D - 137 172 - -
Vifa4g03590 178 Pfam CCCH-type zinc finger 79 100 IPR041367 -
Vifa4g03590 178 SUPERFAMILY CCCH zinc finger 74 102 IPR036855 GO:0046872
Vifa4g03590 178 ProSiteProfiles Zinc finger C3H1-type profile. 75 103 IPR000571 GO:0046872
Vifa4g03590 178 SMART c3hfinal6 143 170 IPR000571 GO:0046872
Vifa4g03590 178 SMART c3hfinal6 77 102 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03590 Vifa-Chr4 1134804883 1134805909 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vifa4g03590 zf-CCCH 4.1e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03590 - - psat:127073579 203.371