Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03589 ATGAGATCTTCCGAAAACATTCCAACGTTCAAGATATCGCCATCGCAATTCTCATCATCTAGCAGCAGCGATATCATTGAGGTGACGCCTCAATTCCCGATGACCAACTATCGCTTTGAACACAATCGGCGCTTTGAACCACGTTCAGCATCCAATGGTTCCCATTCCTTCAGAAGGACAAGTGTCCCGGACAACAACCAATCCAATGCACTGACGAGCCCTCCAACAAACAGAGAAACGGGCAAGATTTTCTTCAAAACCCGTATTTGTACTAGGTTCGGGTTTGGTACATGTAGAAACGGTGAAAGTTGTACCTTTGCTCATGGGGTTGGAGAGATAAGGCAGCCACCGCCAAACTGGCAGGAGCTTGTCTGTCCTCGTACTGAAGAACGGCTGCAAGTGGGCAGGAATTTGAATGATGGTCAAAAAATCATTCAGAAGATGAAGCTCTGCAAGAAGTATTGCAATGGGGAGGAATGTCCTTATGGTGATAACTGTAACTTTCTTCATGAGGATCCTGCCAAGTTTAGGGACGACTCTTGGAAAACAAGAGAGTCCTCTGCAATCAACATTGAAACTTCTAATCATTTGGAAGGCAGTAGGGCTGTAACTAAGCAGGAAAGGGACACTTATTGGAAGACTAAGATATGTCTCAAGTGGATCAATACCGGGAGCTGTCCCTTTGGTGATGGCTGTCACTTTGCTCATGGTGATGCAGAGTTACAAGTTCCTGGTAGAGGCATTGAAGCGGAAGCTATAGTTGCTATAGAAAATTCAATAAAACCTGTCATTCCAACTTTACCAACTACAGGTTCTTCTGCTAATAATGCGCCTACCTTACCAATAAGTGTCCCTGTGGCGACGAAAGAGGGGAAGAAAGCCAAGAAGGAATTACTTTGGAAGAAATTAAACAAGATCAACCGTATTTATGGCGATTGGATTGATGATTTACCTCTTGATCGTCCTGATTTGCCAAGAGAGCCCTGA 987 0.4448 MRSSENIPTFKISPSQFSSSSSSDIIEVTPQFPMTNYRFEHNRRFEPRSASNGSHSFRRTSVPDNNQSNALTSPPTNRETGKIFFKTRICTRFGFGTCRNGESCTFAHGVGEIRQPPPNWQELVCPRTEERLQVGRNLNDGQKIIQKMKLCKKYCNGEECPYGDNCNFLHEDPAKFRDDSWKTRESSAINIETSNHLEGSRAVTKQERDTYWKTKICLKWINTGSCPFGDGCHFAHGDAELQVPGRGIEAEAIVAIENSIKPVIPTLPTTGSSANNAPTLPISVPVATKEGKKAKKELLWKKLNKINRIYGDWIDDLPLDRPDLPREP 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03589 328 FunFam Zinc finger CCCH domain-containing protein 39 142 174 - -
Vifa4g03589 328 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 212 237 IPR000571 GO:0046872
Vifa4g03589 328 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 85 109 IPR000571 GO:0046872
Vifa4g03589 328 Pfam CCCH-type zinc finger 149 170 IPR041367 -
Vifa4g03589 328 SUPERFAMILY CCCH zinc finger 144 172 IPR036855 GO:0046872
Vifa4g03589 328 SUPERFAMILY CCCH zinc finger 83 115 IPR036855 GO:0046872
Vifa4g03589 328 PANTHER CCCH ZINC FINGER/TIS11-RELATED 41 174 IPR045877 GO:0003729
Vifa4g03589 328 SMART c3hfinal6 145 172 IPR000571 GO:0046872
Vifa4g03589 328 SMART c3hfinal6 84 110 IPR000571 GO:0046872
Vifa4g03589 328 SMART c3hfinal6 211 238 IPR000571 GO:0046872
Vifa4g03589 328 ProSiteProfiles Zinc finger C3H1-type profile. 145 173 IPR000571 GO:0046872
Vifa4g03589 328 ProSiteProfiles Zinc finger C3H1-type profile. 84 111 IPR000571 GO:0046872
Vifa4g03589 328 MobiDBLite consensus disorder prediction 1 24 - -
Vifa4g03589 328 MobiDBLite consensus disorder prediction 49 79 - -
Vifa4g03589 328 MobiDBLite consensus disorder prediction 46 79 - -
Vifa4g03589 328 Gene3D - 145 174 - -
Vifa4g03589 328 Gene3D - 204 243 - -
Vifa4g03589 328 Gene3D - 78 115 - -
Vifa4g03589 328 ProSiteProfiles Zinc finger C3H1-type profile. 211 239 IPR000571 GO:0046872
Vifa4g03589 328 SUPERFAMILY CCCH zinc finger 210 242 IPR036855 GO:0046872
Vifa4g03589 328 FunFam Zinc finger CCCH domain-containing protein 206 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03589 Vifa-Chr4 1134800678 1134803044 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03589 213 242 C3H Transcription Factor Family AT1G68200 60.000 7.14e-07 48.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vifa4g03589 zf-CCCH 5.6e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03589 - - psat:127135234 443.351