Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03588 ATGAGTAATTCAGACAACATTCCAACGTTCAAAATGTCACCACAGCTATTCTCATCGTCCAGCAGCTATTCAGCGTCCGATGGTTCCCATTCCTTCAGAAGGACAAGTGTTCGGGACAACAAGCAATCCAATGCACGGATGGGTCCTCCAACAATCAGAGGAACGGGTAACATTTTCTTCAAGACCCGTATTTGTACTAGGTTCGGGTTTGGTACATGTAGAAACGGTGAAAGTTGTACCTTTGCTCATGGGGTTGGAGAGATAAGGCAGCCACCGCCAAACTGGCAGGAGCTTGTCTGTCCTCGTACTGGAGAACGGCTGCAAGTGGGCAAGAATTTGAATGATGATGAGAAAATCATTCAGAAGATGAAGCTTTGCAAGAAGTATTGCAATGGGGAGGAATGTCCTTATGGGGATAAGTGTAACTTTCTTCACGAGGATCTTGCCAAGTTTAGGGACGACTCTTGGAAAACAAGAGAGTCCTCTGCAATCAACATTGAAACTTCTAATCATTTGGAAGGCAGTAGGGCTGGAACTAAGCAGGAAAGGGGCACTTATTGGAAGACTAAGATGTGTCTCAAGTGGATCAATACCGGGAGCTGTCCCTTTGGTGATGGCTGTCACTTTGCCCATGGTGATGCAGAGTTACAAGTTCCTGGTGCAGTTGCCATAGCAAATTCAACAGAAGTGGTCATTCCAACTTTACCAACAACAGGTTCTTCTGCCAATTATGCACCTACTACCTTACCGGCAAATGTACCTGTGGCAATGGAAGAGATGGAAGAGGAGAGGAAGGCAAAGAAGGAATTACTTTGGAAGAAATTAAACAAGATCAACCGTATTTATGGGGATTGGATTGATGATTTACCTCCCGACTTGCCAAGTACAGAGGAGCCATGA 900 0.4522 MSNSDNIPTFKMSPQLFSSSSSYSASDGSHSFRRTSVRDNKQSNARMGPPTIRGTGNIFFKTRICTRFGFGTCRNGESCTFAHGVGEIRQPPPNWQELVCPRTGERLQVGKNLNDDEKIIQKMKLCKKYCNGEECPYGDKCNFLHEDLAKFRDDSWKTRESSAINIETSNHLEGSRAGTKQERGTYWKTKMCLKWINTGSCPFGDGCHFAHGDAELQVPGAVAIANSTEVVIPTLPTTGSSANYAPTTLPANVPVAMEEMEEERKAKKELLWKKLNKINRIYGDWIDDLPPDLPSTEEP 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03588 299 ProSiteProfiles Zinc finger C3H1-type profile. 59 86 IPR000571 GO:0046872
Vifa4g03588 299 ProSiteProfiles Zinc finger C3H1-type profile. 120 148 IPR000571 GO:0046872
Vifa4g03588 299 PANTHER CCCH ZINC FINGER/TIS11-RELATED 38 147 IPR045877 GO:0003729
Vifa4g03588 299 MobiDBLite consensus disorder prediction 18 52 - -
Vifa4g03588 299 Pfam CCCH-type zinc finger 124 145 IPR041367 -
Vifa4g03588 299 Gene3D - 178 218 - -
Vifa4g03588 299 Gene3D - 120 150 - -
Vifa4g03588 299 Gene3D - 54 90 - -
Vifa4g03588 299 SUPERFAMILY CCCH zinc finger 58 90 IPR036855 GO:0046872
Vifa4g03588 299 FunFam Zinc finger CCCH domain-containing protein 39 117 149 - -
Vifa4g03588 299 SMART c3hfinal6 59 85 IPR000571 GO:0046872
Vifa4g03588 299 SMART c3hfinal6 186 213 IPR000571 GO:0046872
Vifa4g03588 299 SMART c3hfinal6 120 147 IPR000571 GO:0046872
Vifa4g03588 299 SUPERFAMILY CCCH zinc finger 185 217 IPR036855 GO:0046872
Vifa4g03588 299 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 60 84 IPR000571 GO:0046872
Vifa4g03588 299 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 187 212 IPR000571 GO:0046872
Vifa4g03588 299 Coils Coil 257 277 - -
Vifa4g03588 299 FunFam Zinc finger CCCH domain-containing protein 181 218 - -
Vifa4g03588 299 SUPERFAMILY CCCH zinc finger 120 146 IPR036855 GO:0046872
Vifa4g03588 299 ProSiteProfiles Zinc finger C3H1-type profile. 186 214 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03588 Vifa-Chr4 1134637796 1134640153 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03588 188 217 C3H Transcription Factor Family AT1G68200 60.000 6.44e-07 48.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vifa4g03588 zf-CCCH 1.3e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03588 - - psat:127135234 436.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g03588 4 1134637796 1134640153 Vifa4g03588 4 1134637796 1134640153 ECH