Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03587 ATGAGATCTTCCGAAAACATTCCAACGTTCAAGATATCGCCATCGCAATTCTCATCATCTAGCAGCAGTGATATCATTGAGGTGACGCCTCAATTCCCGATGAGCAACTATCGCTTTGAACACAATCGGCGCTTTGAACCACGTTCAGCATCCAATGGTTCCCATTCCTTCAGAAGGACAAGTGTTCCGGACAACAACCAATCCAATGGACTGATGGGCCCTCCAACAAACAGAGAAACGGGCAACATTTTTTTCAAAACCCGTATTTGTACTAGGTTCCGGTTTGGTGCCTGTAGAAATGGTCAAAATTGTACCTTTGCTCATGGGGTTGATGAGATAAGACGGCCACCACTAAACTGGCAGGAGCTTGTCAGTCCTAGCACTGAAGAACCGCTGAAATTGGGCGGGAATAAGAATGATGATCAAACAATCATTCAAAAGATGAAGCTCTGCAAGAAGTATTGCAATGGGGAGGAATGTCCTTATGGTGATAAGTGTAACTTTCTTCACGAGGATCCTGCAAAGTTTAGGGACGATTCTTGGAAAACAATAGAGTCCTCTGCAATCAGCATTGGAACTTCTAATCATTTGGAAGGCAGTAGGGCTGGAACTAAGCAGGAAAGGGGCACTTATTGGAAGACTAAGAAATGTCTCAAGTGGGTCAATACCGGGAGTTGTCCCTTTGGTGATGGCTGTCACTTTGCTCATGGCGATGCAGAGTCACAAGTTTCTAGTGGAGGCATTGAAGCTGAAGCTGCAGCTGCCATTTCAACTATACCAACAACAGGTTCTTCTGTCAATTATGCACCTACTACCTTACCAGCAAATGTACCTGCGGCGACGGAAGAGGAGAGGAAGGCCAAGAAGGAATTACTTTGGAAGAAATTAAACAAGATCAACCGTATTTATGGCGATTGGATTGATGATTTACCTCCCGACTTGCCAAGTACAGCGGAGCCCTGA 963 0.4517 MRSSENIPTFKISPSQFSSSSSSDIIEVTPQFPMSNYRFEHNRRFEPRSASNGSHSFRRTSVPDNNQSNGLMGPPTNRETGNIFFKTRICTRFRFGACRNGQNCTFAHGVDEIRRPPLNWQELVSPSTEEPLKLGGNKNDDQTIIQKMKLCKKYCNGEECPYGDKCNFLHEDPAKFRDDSWKTIESSAISIGTSNHLEGSRAGTKQERGTYWKTKKCLKWVNTGSCPFGDGCHFAHGDAESQVSSGGIEAEAAAAISTIPTTGSSVNYAPTTLPANVPAATEEERKAKKELLWKKLNKINRIYGDWIDDLPPDLPSTAEP 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03587 320 FunFam Zinc finger CCCH domain-containing protein 39 142 174 - -
Vifa4g03587 320 SUPERFAMILY CCCH zinc finger 83 115 IPR036855 GO:0046872
Vifa4g03587 320 Pfam CCCH-type zinc finger 149 170 IPR041367 -
Vifa4g03587 320 Gene3D - 77 115 - -
Vifa4g03587 320 Gene3D - 203 243 - -
Vifa4g03587 320 Gene3D - 145 174 - -
Vifa4g03587 320 SMART c3hfinal6 211 238 IPR000571 GO:0046872
Vifa4g03587 320 SMART c3hfinal6 84 110 IPR000571 GO:0046872
Vifa4g03587 320 SMART c3hfinal6 145 172 IPR000571 GO:0046872
Vifa4g03587 320 SUPERFAMILY CCCH zinc finger 145 172 IPR036855 GO:0046872
Vifa4g03587 320 PANTHER CCCH ZINC FINGER/TIS11-RELATED 41 175 IPR045877 GO:0003729
Vifa4g03587 320 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 85 109 IPR000571 GO:0046872
Vifa4g03587 320 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 212 237 IPR000571 GO:0046872
Vifa4g03587 320 MobiDBLite consensus disorder prediction 49 79 - -
Vifa4g03587 320 ProSiteProfiles Zinc finger C3H1-type profile. 145 173 IPR000571 GO:0046872
Vifa4g03587 320 SUPERFAMILY CCCH zinc finger 210 241 IPR036855 GO:0046872
Vifa4g03587 320 MobiDBLite consensus disorder prediction 46 79 - -
Vifa4g03587 320 ProSiteProfiles Zinc finger C3H1-type profile. 84 111 IPR000571 GO:0046872
Vifa4g03587 320 MobiDBLite consensus disorder prediction 1 23 - -
Vifa4g03587 320 ProSiteProfiles Zinc finger C3H1-type profile. 211 239 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03587 Vifa-Chr4 1134518707 1134521077 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vifa4g03587 zf-CCCH 3.9e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03587 - - psat:127073579 422.165