Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03582 ATGCCTTATTCAAATAACATTCCAACGTTTAAGATGCCACCACCGCAATTCTCATCATCCACCACCAGCGATATCATTCAGGTGGGCCCTCAATTCCCCATGACCAACCAACCCTCTGAACACAATCAACCCTTTAAACACGATCAACGCTTTGAACCACATTCAGCATTGGCTCGTTCCCATTCCTTCAAAAGGCCAAGAATGTCTGACAACAACCATTCCAATACACTGATGGGCCCTCCACCAAGCAGACCAACAGGCAACATTTTCTTCAAGACCCGTATTTGTACTAGGTTTGGCTTTGGTACCTGTAGAAACGGTGAAAATTGTACCTTTGCTCATGGGCCTCATGAGATAAGGCAGCCACCACCAAACTGGCAGGACCTCGTAGGTCTCCGTACCCAAGAAGGGAATTCGAATGATGATCAGAAAATCATTCACAAGATGAAGCTCTGCAAGAGGTATTACAATGGTCAGGAATGTCCTTATGGTGATAACTGTAACTTTCTTCATCAGGATCCTGCTAAGTTTAGGGACGACTCTTGGAATACAAGAGAGTCCCCTGCCATCAGCTCTGCCATCAGCATTGGAACTTGTAATCATTTGGAAGGCAATAGGGCTGGGACTAAGCCAGCAAGGGGAACTAATTGGAATACTAAGATATGTCTCAAGTGGATCAATACCGGGATCTGTCCCTTTGGTGATAAATGTCACTTTGCTCATGGAGATGCAGAGTTACCAGTTCCCGGTGGAGGCATTGAAGTTGAAGTTGCAGTTGCCATAACAAATTCAACAAAAGTTGTTATTCCAACTTTACCAACAACAAGTTCTTCTGCCAATTATGCACCTACTACCTTACCAGCAAATGTACCTGCAGCGATGGAAGAGGAGAAGAAGGCCAGGAAGGAATTACTTTGGAAGAAGTTAAACAAGATTACCCATATTTATGGCGATTGGATTGATGATTGA 969 0.4417 MPYSNNIPTFKMPPPQFSSSTTSDIIQVGPQFPMTNQPSEHNQPFKHDQRFEPHSALARSHSFKRPRMSDNNHSNTLMGPPPSRPTGNIFFKTRICTRFGFGTCRNGENCTFAHGPHEIRQPPPNWQDLVGLRTQEGNSNDDQKIIHKMKLCKRYYNGQECPYGDNCNFLHQDPAKFRDDSWNTRESPAISSAISIGTCNHLEGNRAGTKPARGTNWNTKICLKWINTGICPFGDKCHFAHGDAELPVPGGGIEVEVAVAITNSTKVVIPTLPTTSSSANYAPTTLPANVPAAMEEEKKARKELLWKKLNKITHIYGDWIDD 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03582 322 SUPERFAMILY CCCH zinc finger 89 121 IPR036855 GO:0046872
Vifa4g03582 322 MobiDBLite consensus disorder prediction 1 22 - -
Vifa4g03582 322 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 91 116 IPR000571 GO:0046872
Vifa4g03582 322 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 148 171 IPR000571 GO:0046872
Vifa4g03582 322 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 217 242 IPR000571 GO:0046872
Vifa4g03582 322 Gene3D - 211 248 - -
Vifa4g03582 322 Gene3D - 143 175 - -
Vifa4g03582 322 Gene3D - 84 121 - -
Vifa4g03582 322 MobiDBLite consensus disorder prediction 43 68 - -
Vifa4g03582 322 MobiDBLite consensus disorder prediction 34 87 - -
Vifa4g03582 322 SUPERFAMILY CCCH zinc finger 145 173 IPR036855 GO:0046872
Vifa4g03582 322 SUPERFAMILY CCCH zinc finger 215 246 IPR036855 GO:0046872
Vifa4g03582 322 ProSiteProfiles Zinc finger C3H1-type profile. 216 244 IPR000571 GO:0046872
Vifa4g03582 322 ProSiteProfiles Zinc finger C3H1-type profile. 90 117 IPR000571 GO:0046872
Vifa4g03582 322 FunFam Zinc finger CCCH domain-containing protein 211 248 - -
Vifa4g03582 322 PANTHER CCCH ZINC FINGER/TIS11-RELATED 27 177 IPR045877 GO:0003729
Vifa4g03582 322 SMART c3hfinal6 216 243 IPR000571 GO:0046872
Vifa4g03582 322 SMART c3hfinal6 90 116 IPR000571 GO:0046872
Vifa4g03582 322 SMART c3hfinal6 146 173 IPR000571 GO:0046872
Vifa4g03582 322 ProSiteProfiles Zinc finger C3H1-type profile. 146 174 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03582 Vifa-Chr4 1133760835 1133762864 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03582 219 246 C3H Transcription Factor Family AT1G68200 60.714 4.93e-06 45.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vifa4g03582 zf-CCCH 6.9e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03582 - - psat:127073579 471.47