Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03579 ATGGCCACCACACCTTACAAAGATGAACCTGACTACGACAGCAGCTCCTCCTCCATCACCGTACCAGAATCTACCCGGAGCTGGATGAGTAACCTGAGCTTCGGAAGCCGCCGTCGCCGAAGCTCCGTCTCCGTATCTTCCACCACCACATACACCTCTTCAACTATATCTTCCAACGCTAAACCTCACAAGGCAAATCAAGTTGCATGGCAGGCCATGAGCCGACTCCGACTCGACAAAGGTCGAGTCGGACTCGACCATTTCCGCCTCTTAAAACGACTTGGAAGCGGCGACATAGGGAATGTGTATCTTTGTCAGATAAGAAACCCGGTGGTGGGTTTGCCTCAGTGTTTGTATGCCATGAAAGTCGTTGATAGAGAAGCACTTGCTATAAGAAAGAAGCTTCAGAGAGCTGAGATGGAGAAGGAGATTTTGCGTATGCTTGATCACCCTTTTTTGCCTACTTTGTATTCCGAGTTTGATGCTTCTCATTACTCTTGTTTGGTAATGGAGTTTTGTCCCGGTGGCGACTTATACGCTTCACGCCAACGCCAACCTGGGAAGCGCTTTTCCTTATCATCCTCTAAGTTTTATGCAGCTGAGACACTATTGGCGCTAGAATATCTACACATGATGGGAATAGTATACAGAGATTTAAAGCCAGAGAATGTTTTAGTAAGAGAAGATGGACACATAATGCTATCAGATTTTGATCTTTCTCTCAAATGCGACGTCGTTCCAAAGCTGTTAAGAAGCAAAACAAGATTAGAACGTAGCATCAAAACCACTACAAAGAGAGCTTCAACACCTTCATGCATTTCACCCATGCAACCTGTTTTATCATGTTTATTATCATCAAGCAAGAAAAAGAAAACGACAGTTGAAACAGTTATAAGAGAGAATGTTCAAGAAGAGTTTGAGGTTGATCTTGATCCTGATTTCGTAGCGGAACCAATCGAAGCAAGATCGAAATCATTCGTGGGGACACATGAGTATTTAGCACCAGAAGTTATATTAGGACAAGGTCATGGAAGTGCAGTGGATTGGTGGACATTTGGTGTTTTTTTGTTTGAGATGTTATATGGAAGAACACCGTTTAAAGGTGAAAACAATGAGAAAACATTGGTTAACATTCTTAAACAAGAATTATGTTTTCCTAGGATTACTGTTAATAGTAATTATGAGTTTGAAGAAATGGTGAAAGTTCAAGATCTTATAAGTAAACTGTTGGTGAAGAATCCAAATAAGAGAATTGGAAGTTGTTTGGGTTCTGTTGAGATTAAAAGACATGAGTTTTTCAAAGGTGTTAATTGGGCTTTGATTAGATCAGTTAAACCTCCTGAAGTTCCTAGTGATAAGAACCAGATTAGGAATAGGGTTATGGTGCCTAAATTAAGCAAGAAAGATAGAGATCTACCATTTCAACCTAATAATCGATTTGATTACTTCTAA 1452 0.4077 MATTPYKDEPDYDSSSSSITVPESTRSWMSNLSFGSRRRRSSVSVSSTTTYTSSTISSNAKPHKANQVAWQAMSRLRLDKGRVGLDHFRLLKRLGSGDIGNVYLCQIRNPVVGLPQCLYAMKVVDREALAIRKKLQRAEMEKEILRMLDHPFLPTLYSEFDASHYSCLVMEFCPGGDLYASRQRQPGKRFSLSSSKFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLSLKCDVVPKLLRSKTRLERSIKTTTKRASTPSCISPMQPVLSCLLSSSKKKKTTVETVIRENVQEEFEVDLDPDFVAEPIEARSKSFVGTHEYLAPEVILGQGHGSAVDWWTFGVFLFEMLYGRTPFKGENNEKTLVNILKQELCFPRITVNSNYEFEEMVKVQDLISKLLVKNPNKRIGSCLGSVEIKRHEFFKGVNWALIRSVKPPEVPSDKNQIRNRVMVPKLSKKDRDLPFQPNNRFDYF 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03579 483 Coils Coil 121 141 - -
Vifa4g03579 483 SUPERFAMILY Protein kinase-like (PK-like) 67 456 IPR011009 -
Vifa4g03579 483 MobiDBLite consensus disorder prediction 1 21 - -
Vifa4g03579 483 Gene3D Transferase(Phosphotransferase) domain 1 173 242 - -
Vifa4g03579 483 FunFam protein kinase PINOID 2 86 172 - -
Vifa4g03579 483 FunFam serine/threonine-protein kinase D6PK-like 321 451 - -
Vifa4g03579 483 ProSitePatterns Serine/Threonine protein kinases active-site signature. 214 226 IPR008271 GO:0004672|GO:0006468
Vifa4g03579 483 SMART serkin_6 88 433 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g03579 483 Gene3D Phosphorylase Kinase; domain 1 86 172 - -
Vifa4g03579 483 Pfam Protein kinase domain 89 242 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g03579 483 Pfam Protein kinase domain 323 433 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g03579 483 Gene3D Transferase(Phosphotransferase) domain 1 321 451 - -
Vifa4g03579 483 FunFam protein kinase PINOID 173 241 - -
Vifa4g03579 483 CDD STKc_phototropin_like 86 450 - -
Vifa4g03579 483 ProSiteProfiles Protein kinase domain profile. 88 433 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g03579 483 PANTHER FLIPPASE KINASE 1-RELATED 36 455 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03579 Vifa-Chr4 1131825535 1131827200 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03579 6 483 AGC Kinase Gene Family AT2G26700 59.357 0.0 579
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Vifa4g03579 Pkinase 1.9e-31 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g03579 4 1131825535 1131827200 Vifa4g03579 4 1131825535 1131827200 ECH