Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03574 ATGGAGAGGTTAGAGTTGAAAGAGGTTCAGAAACTCGAAGGTCACACCGATAGGGTTTGGAGCTTGGATTGGAATCCGGCCACTGGTCATGCCGGTGTTCCGCTCGTTTTCGCTTCTTGCAGCGGCGATAAAACCGGTAACGAGCCAGTTGTAATAGCACGCGGAGGATTCACGGGTCTATTCCCAGAAGGAAGTAGAGAAGCAATCGGCATGTCGAAGGAGATAAGCATTTTTCTTTGTAATGTTCAGTTTACAAAAGATGCTGGTGCCTTTTGTGTGACAGGAGTTAAACTTGACAATGCAACAACTATAGCAACGTTTGATCCAAATGAGAAAACCTACAACATTAATGGAAAGGATGTGCAAGGACACTTCATGGTGGATTACACTGCTGCTCAGATTGACCACAATGTGTCGAATAAATATAGAGGAAAACATGACAGCAACATCATAGTTGCACAAAAGTACTACATATCTATCAGTGGCTATAATGTCAGTTCATTGGTTGATGGCATGTGCAACATAGCATGTGTTACAGTTGCCCTTAAAGAATGTTTGTTTCTTTCATATCAGAATATGCAGAATATTATTCTATTGTTTTCTATTGCTGTTCAGCATCTGATTGCAGAAGTCAGTGAAATTATGACTAATGATACTGTAGATAAGGCTGGTTTGTGGAAAAACAAACTCATTGATCAGTCATTGGAGCTTTTAGATTATTTACCTCAAGCAATTCAAGACATTTGCTTCTTGAAAGAGATCCACATGGAAATGTTCAAGTACCTAAAGTTGCATATCATTATATTTTGTGTTCATTTGTCTTCTTTATCCAATTTTGAATCAGTTGCAGACTGTGATACCAGAGATTTTACTGATAAAAAAAGGGAGGACATGTTGGTTTCCGATTTCGTTCGACTTTGCTTTAAATATGAAGGTTCTGCAGTTCAGTGCAGTAATCAAATTGGTGTAAGTAATGGTGACTCTGCATCTGTACCGTATTTGAAGGATTGGCATTTTGTGAAGGAGTATCCTGATTACGTACCATACATCACTCCGATGTTCTTTTGTGATGATTGGCTCAACTTGTATCTCGATAACTTTAGAATGAATACTTATTCCGACAGAGACCAGCAAAATAAGGAAATATGTTGCTCTGACTATCGTTTTGTTTACATGGGAGTAAAAGGATCTTGGACTCCTCTACATGCTGATGTTTTCAGGTCGTATAGCTGGTCAGCAAATGTCTGTGGAAAGAAGAGATGGTTTTTTCTAGATCCTTCCCAGTGCCATCTTGTGTTTGACAGGAACATGAAAAGCTGTGTATATAATATCTTTGATGAAGTATCTGACTCAAAGTATCCTAGTTTTAAAAAGGCTATCTGGTTAGAATGCACACAAGAAGCAGGTGAAATCATATTTGTTCCTAGCGGATGGTTGGATTTGGGAAATGGGAAAACTCTTGATCTTGAACGGTGTTCCCGATCGAAGCTTCGAAAACAATGCATAAAGTATCTTGGACCTCAAGAGAGGGAGAACTATGAATATGTTGTCTGCGATGGAAAAATTATCAACAACCAATCTGGAGATTTTCTTCATACCAAAAAGGATTCTGAAGATGCTAAGTGGATATTTGTAATGAGCACCGAGAAGAAACTTTATGCTGGAAAGAAAAAGAAGGGGTTGTTCCATCATTCTTCTTTTTTGGCTGGTGGAGCTACCTTGGCTGCTGGACGGCTCGAAGCCGAGGATGGGGTTCTGAAGTCCATCTCTGCATATAGTGGACACTATCGGCCAACAGACGAAACACTCGACGCGTTCTTATCATATCTCAGGGAAAATGGTGTCAATCTTGTTACCTTTCATGAATTTTGTGTAGGTATGCGTAGCTTGGACCAAATGGTAGTCAAGGAAGGATCATGGTCCTAG 1926 0.3982 MERLELKEVQKLEGHTDRVWSLDWNPATGHAGVPLVFASCSGDKTGNEPVVIARGGFTGLFPEGSREAIGMSKEISIFLCNVQFTKDAGAFCVTGVKLDNATTIATFDPNEKTYNINGKDVQGHFMVDYTAAQIDHNVSNKYRGKHDSNIIVAQKYYISISGYNVSSLVDGMCNIACVTVALKECLFLSYQNMQNIILLFSIAVQHLIAEVSEIMTNDTVDKAGLWKNKLIDQSLELLDYLPQAIQDICFLKEIHMEMFKYLKLHIIIFCVHLSSLSNFESVADCDTRDFTDKKREDMLVSDFVRLCFKYEGSAVQCSNQIGVSNGDSASVPYLKDWHFVKEYPDYVPYITPMFFCDDWLNLYLDNFRMNTYSDRDQQNKEICCSDYRFVYMGVKGSWTPLHADVFRSYSWSANVCGKKRWFFLDPSQCHLVFDRNMKSCVYNIFDEVSDSKYPSFKKAIWLECTQEAGEIIFVPSGWLDLGNGKTLDLERCSRSKLRKQCIKYLGPQERENYEYVVCDGKIINNQSGDFLHTKKDSEDAKWIFVMSTEKKLYAGKKKKGLFHHSSFLAGGATLAAGRLEAEDGVLKSISAYSGHYRPTDETLDAFLSYLRENGVNLVTFHEFCVGMRSLDQMVVKEGSWS 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03574 641 Gene3D Cupin 261 479 - -
Vifa4g03574 641 SUPERFAMILY PLC-like phosphodiesterases 48 134 IPR017946 GO:0006629|GO:0008081
Vifa4g03574 641 SMART WD40_4 5 54 IPR001680 GO:0005515
Vifa4g03574 641 ProSiteProfiles JmjC domain profile. 357 508 IPR003347 -
Vifa4g03574 641 PANTHER IQ DOMAIN-CONTAINING PROTEIN IQM3 478 619 IPR044159 -
Vifa4g03574 641 SUPERFAMILY Clavaminate synthase-like 283 478 - -
Vifa4g03574 641 Pfam Cupin-like domain 379 479 IPR041667 -
Vifa4g03574 641 SMART cupin_9 332 492 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03574 Vifa-Chr4 1128806950 1128812689 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03574 46 139 Receptor kinase-like Gene Family AT5G58050 48.485 5.51e-21 95.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vifa4g03574 Cupin_8 1.2e-10 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03574 - - lja:Lj1g3v0342020.1 363.614