Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03570 ATGAACAAGTATATAACCAATTCAATTTTCAACCTCTCATATTCAACTCTATATGAAAACTTCCATGGCAAGCAACATAGCAGAAAGGTGCAATATCCATTAGACTCTTCCTCCTACAAGATCATCAACGAGATTGGCGTCGGTAACAGCGCTGTCGTCTACAAAGCAATCTGCATCCCAATAAACTCCACACCAGTTGCTATAAAATCCGTAGACTTAGATCGTTCACGCCCTGACCTCGACGATGTTCAACGCGAAGAAAAGACATTATCACTTCTTTCTCATCCCAACATCCTCAAAGCTATTTGTTCCTTCACAGTCGACCATCGTCTTTACTCTTTGGGTGGTTTCAAAGCTAATATTTGGTCTTTTGATATTGATGATGTTAGTGGTATTGTGAAGAACCGTGAAGCTACGTTGGCAACTACTGAAACTCTCTTCAATGCATTTTAA 453 0.3996 MNKYITNSIFNLSYSTLYENFHGKQHSRKVQYPLDSSSYKIINEIGVGNSAVVYKAICIPINSTPVAIKSVDLDRSRPDLDDVQREEKTLSLLSHPNILKAICSFTVDHRLYSLGGFKANIWSFDIDDVSGIVKNREATLATTETLFNAF 150
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03570 150 ProSitePatterns Protein kinases ATP-binding region signature. 45 69 IPR017441 GO:0005524
Vifa4g03570 150 Gene3D Phosphorylase Kinase; domain 1 27 114 - -
Vifa4g03570 150 ProSiteProfiles Protein kinase domain profile. 39 150 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g03570 150 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 31 112 IPR047173 GO:0043539
Vifa4g03570 150 SUPERFAMILY Protein kinase-like (PK-like) 18 112 IPR011009 -
Vifa4g03570 150 Pfam Protein tyrosine and serine/threonine kinase 40 109 IPR001245 GO:0004672|GO:0006468
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vifa4g03570 Vifa-Chr4 1122641766 1122642584 Dispersed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03570 29 117 MAP Kinase Kinase Kinase Kinase AT4G14480 62.921 1.08e-32 118
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-Fray Vifa4g03570 PK_Tyr_Ser-Thr 2.8e-05 CL0016
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03570 K08835 - gmx:100820227 143.665