Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03568 ATGCTTTTACGTCTCCGTCAAGCTTGTGATCACCCACTTCTTGTTAAAGAATACAATTCTGATCCTGTTGGAAAAGATTCTGTTGAAATGGCAAAAAGGCTTCCAAAAGAGATGCTGATAAATCTGTTTAATAGTTTGGAAACAACTTCCGCTATATGTTTTGTCTGCAATAGGCCAGAGAATAAGCTTGGAGATGATGAAACATGGGATAGGGCTGAAAGTGCTCTCAAGGAGGCTTTGGATGAGTTTGGCAAGCCATGGAAGTTGAATGAAGGGGATGGTGCATTCTATGGACCAAAGATAGATATCAGTGTATCTGATGCATTGAGTAGGAAATTCCAGTGTGCAACTCTACAGCTTGACTTCCAGCTTCCTGATCGTTTTAAGTTGGAATTCTCAGCTGAGGATGAAGCCAAAATTGAGAGGCCTGTTATGATACACAGAGCCATTCTAGGATCAGTTGAACGCATGTTTGCCATACTTTTAGAGCACTACAAGGGTAAATGGCCCTTCTGGCTCAGTCCTCGTCAAGCAATTTTGTGCCCTGTTTCTGAGAAATCACAAGCTTATGCTCTGAAGGTTCGAGATCAGATTCACCAAGCAGGATATCATGTAGATGCTGATACAACTGATAGGAAGATTCAGAAGAAGAAAAAATTACAAGCTGCAATTAAGGATTCTGTGTCTGAAAATGAGGCATTTCAGAAAGTATTTGGAAAAGAAAAGCATGGATATGTTCGTAGTATGGGACTTGGAGTTACACCATCTCATATTAATAGATCTACGAGATCGACATCTTCTTCTGCAGAAAGTGAACAAATAAAGGAAATGCAAGAAGAAATTAATGCACTTAAGGAAAAGAATTCAAAAATTGATGAATTAACACAGGCAATCATATTCTTAACGCAAAGGGACAAGGCGAGGACAAAGGAAATTGAACTCTTAATGCAAATGCAGAATTTTAGTGGAAGACAGGGATTGGAATCACCCGCTGATGGTAGACGTTCATCTGAGTCTAGCTACTGTATTGGAGATAATGGAACTTCAGGGGGGACAAATTAG 1062 0.3983 MLLRLRQACDHPLLVKEYNSDPVGKDSVEMAKRLPKEMLINLFNSLETTSAICFVCNRPENKLGDDETWDRAESALKEALDEFGKPWKLNEGDGAFYGPKIDISVSDALSRKFQCATLQLDFQLPDRFKLEFSAEDEAKIERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAILCPVSEKSQAYALKVRDQIHQAGYHVDADTTDRKIQKKKKLQAAIKDSVSENEAFQKVFGKEKHGYVRSMGLGVTPSHINRSTRSTSSSAESEQIKEMQEEINALKEKNSKIDELTQAIIFLTQRDKARTKEIELLMQMQNFSGRQGLESPADGRRSSESSYCIGDNGTSGGTN 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03568 353 MobiDBLite consensus disorder prediction 250 276 - -
Vifa4g03568 353 MobiDBLite consensus disorder prediction 323 353 - -
Vifa4g03568 353 SUPERFAMILY Class II aaRS ABD-related 163 219 - -
Vifa4g03568 353 PRINTS Threonyl-tRNA synthetase signature 143 156 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Vifa4g03568 353 PRINTS Threonyl-tRNA synthetase signature 170 182 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Vifa4g03568 353 PRINTS Threonyl-tRNA synthetase signature 99 127 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Vifa4g03568 353 PANTHER THREONINE-TRNA LIGASE 57 227 - -
Vifa4g03568 353 SUPERFAMILY Class II aaRS and biotin synthetases 37 162 IPR045864 -
Vifa4g03568 353 Gene3D - 169 300 IPR036621 -
Vifa4g03568 353 Gene3D Bira Bifunctional Protein; Domain 2 25 168 IPR045864 -
Vifa4g03568 353 Coils Coil 267 304 - -
Vifa4g03568 353 MobiDBLite consensus disorder prediction 254 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03568 Vifa-Chr4 1121030969 1121033496 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03568 1 59 RAD5 or RAD16-like Gene Family AT1G50410 66.102 1.59e-16 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03568 K01868 - gmx:100812652 296.975