Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03565 ATGGTGATTCCTATGACTATGTGTGGTCAAGAAGAACTTGATTTGTCCAGAGATGGCAGCCACTACAGTCTTTCCACCGGAATATTGCCTTCTCTCGGAGCCAGAAGTAACCGGAGAGTTAAACTTAGGCCGCTCATTATATCTCCTTATGACCGCCGCTACAGGATATGGGAAACTTTCCTTGTTACATTGGTAGTGTATACAGCTTGGGTATCTCCATTTGAATTTGGATTCCTTAAGAAACCACAAGAACCTCTTTCTATTTCAGACAATATTGTCAATGGATTCTTTGCTATAGACATGGTTCTCACATTCTTTGTGGCTTTCATAGACAAAACTACATATCTGTTTGTTGATAACCCGAAAAAGATTGCTTGGAGATATGCAAGAACTTGGTTTGTATTAGATCTTATATCAATAATTCCTTCTGAGCTTGTCGCGAGTCTTTCCCCTGCTCCTATCCAAACTTATGGCCTATTCAATATGCTTAGGCTTTGGCGTCTTCGAAGAGTTAGCTCTTTGTTTTCTCGGCTTGAGAAGGACAGAAACTTTAACTACTTTTGGGTTCGGTGTGCGAAGCTCATTTGTGTTACTCTTTTTGCGGTGCATTGTGCTGGATGCTTTTATTATCTTCTTGCCGCGCGTTATCACGATCCTAAAAAGACGTGGATTGGCGAAACAATGGAAGATTTCCTTCAACAGTCCTTGTGGACAAGATATGTGACAACTATTTACTGGTCCATCACGACTTTGACAACCGTTGGTTACGGAGATTTGCATCCGGTGAACGAGAGGGAAATGATCTTCGTCATCTTTTACATGCTCTTTAATCTAGGATTAACAGCATATCTGATTGGTAACATGACTAACTTAGTCGTCCACGGCACAAGTCGAACCAGAAAATTCAGGGATACTATACAAGCTGCGTCGAGTTTTTCTCAGAGGAACCAATTGCCACCTCGCTTACAAGATCAAATGCTTGCTCACTTGTGTTTGAAGTTCAGAACAGACTCTGAGGGGTTGCAGCAACAAGAGACGCTCGACTCTCTTCCGAAAGCTATCAGATCAAGCATTTCACATTATCTTTTTTATAATTTGATGGATAAGGTCTATTTATTCAAAGGGGTTTCAAATGACTTGCTCTTTCAATTGGTATCGGAGATGAAGCCGGAGTATTTTCCACCAAAAGAAGATGTTATATTACAAAACGAAGCTCCAACCGATTTTTACATTCTAGTCACCGGAGCTGTGGACTTACTAGTTCTTAAAGGCGGGGTTGAACAAGTTGTTGGGGAGGCAAAAACAGGAGAACTTTGTGGCGAAATTGGTGTACTTTGCTATAAGCCACAACATTTTACCGTTCGAACTAAGCGATTAAGTCAACTTTTGAGGCTGAACCGGACCACCTTCATGAATATCGTTCAAGCTAATGTTGGAGACGGAACCATAATCATGAATAATCTTCTTCAGCATTTGAAAGAGCTTAACGATCCGATCATGGAGGGAGTTTTGGTAGAGACGGAGAACATGTTAGCTCGCGGCAGAATGGACTTACCGGTGAGTCTATGCTTTGCAGCGTCAAGAGGAGATGATTTGTTGTTACATCAACTGCTAAAACGAGGTTTGGATCCAAATGAATCTGACAACAATGGAAGAACAACATTGCATATAGCTGCATCTAAAGGAGAAGAAAACTGTGTTTTGCTTCTGTTAGATTATGGGGCAAATCCCAATATTAGAGATTCGGATGGAAATGTAGCATTGTGGGAGGCTATAGTTGGTGGACATGAAACAGTAAAAAAAGTTTTGGTACAAAATGGAGCAACCTTGCGAAGTGGTGATGTTGGTCAATATGCATGCACTGCTGCTGAACAAAATAATCTCAATTTGTTACAAGACATTGTGCGTTATGGAGGAGATGTCTCACTTCCAAGTAACAACGTTGGAACCACGGCTTTACATGTGGCGGTGTCCGAAGACAACGTAGAAATTGTCAAATTTCTCTTAGAAAATGGAGCTAACATTGATAAACCAGATAGATATGGTTGGACACCAAGAGATTTAGCTGAGCAACAAGGTCATGTAGAAATCAAAGCCATTTTTGAAGCTAAAGGAGAACAGCCTAAGACTCAATCTTTTGTTTCTATGTCTATTCCTGAGAGGCAGGGTAGTGGTGCTAAGGTGAGGTACCTTGGTAGATTTACAAGTGAGCCAATAATACCTATGCCTCAAGATGGATCATTTCAAGGGAATGATGGTTCGTGGATTTCGAATCGTCCGAGGCGTAGGACTAACAATTTCCACAACTCGCTATTCGGGATAATGTCGGCGGCAACAAACGGAGAAAATGACCAGGTTTTCTCTCTTAACATGAATAACAATGCAAGGAGTGGTGTGAAGAGTATTGCGCGTCCAACTAGAGTTACAATTAGTTGTCCTGAAAAAGGTGAGATTGCTGGGAAGCTTATATTGTTACCTGAAAGTTTTAAAGATTTACTTGAGATTGGAGGTAAGAAATTTGGTATAGTTGCTAGTAAGGTTGTTTGCAAAGATGGAGCTGAAATTGATGATATTGAGGTTATTAGAGATGGGGACCATCTTATTTTTGTTGGGGATGGTGGGGTGCTAGATTCCAATTGTGCAACACAATGTAATGGTGTCATTCCCTAG 2670 0.4097 MVIPMTMCGQEELDLSRDGSHYSLSTGILPSLGARSNRRVKLRPLIISPYDRRYRIWETFLVTLVVYTAWVSPFEFGFLKKPQEPLSISDNIVNGFFAIDMVLTFFVAFIDKTTYLFVDNPKKIAWRYARTWFVLDLISIIPSELVASLSPAPIQTYGLFNMLRLWRLRRVSSLFSRLEKDRNFNYFWVRCAKLICVTLFAVHCAGCFYYLLAARYHDPKKTWIGETMEDFLQQSLWTRYVTTIYWSITTLTTVGYGDLHPVNEREMIFVIFYMLFNLGLTAYLIGNMTNLVVHGTSRTRKFRDTIQAASSFSQRNQLPPRLQDQMLAHLCLKFRTDSEGLQQQETLDSLPKAIRSSISHYLFYNLMDKVYLFKGVSNDLLFQLVSEMKPEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKGGVEQVVGEAKTGELCGEIGVLCYKPQHFTVRTKRLSQLLRLNRTTFMNIVQANVGDGTIIMNNLLQHLKELNDPIMEGVLVETENMLARGRMDLPVSLCFAASRGDDLLLHQLLKRGLDPNESDNNGRTTLHIAASKGEENCVLLLLDYGANPNIRDSDGNVALWEAIVGGHETVKKVLVQNGATLRSGDVGQYACTAAEQNNLNLLQDIVRYGGDVSLPSNNVGTTALHVAVSEDNVEIVKFLLENGANIDKPDRYGWTPRDLAEQQGHVEIKAIFEAKGEQPKTQSFVSMSIPERQGSGAKVRYLGRFTSEPIIPMPQDGSFQGNDGSWISNRPRRRTNNFHNSLFGIMSAATNGENDQVFSLNMNNNARSGVKSIARPTRVTISCPEKGEIAGKLILLPESFKDLLEIGGKKFGIVASKVVCKDGAEIDDIEVIRDGDHLIFVGDGGVLDSNCATQCNGVIP 889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03565 889 Pfam KHA, dimerisation domain of potassium ion channel 807 869 IPR021789 -
Vifa4g03565 889 ProSiteProfiles Ankyrin repeat region circular profile. 550 581 - -
Vifa4g03565 889 FunFam Potassium channel KAT2 360 496 - -
Vifa4g03565 889 Gene3D - 56 293 - -
Vifa4g03565 889 ProSiteProfiles KHA domain profile. 807 887 IPR021789 -
Vifa4g03565 889 Pfam Cyclic nucleotide-binding domain 391 476 IPR000595 -
Vifa4g03565 889 Gene3D Jelly Rolls 336 497 IPR014710 -
Vifa4g03565 889 Pfam Ion transport protein 55 299 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vifa4g03565 889 FunFam Potassium channel SKOR 55 293 - -
Vifa4g03565 889 ProSiteProfiles Ankyrin repeat region circular profile. 648 680 - -
Vifa4g03565 889 SUPERFAMILY Ankyrin repeat 521 703 IPR036770 -
Vifa4g03565 889 SMART ANK_2a 648 677 IPR002110 GO:0005515
Vifa4g03565 889 SMART ANK_2a 583 612 IPR002110 GO:0005515
Vifa4g03565 889 SMART ANK_2a 517 546 IPR002110 GO:0005515
Vifa4g03565 889 SMART ANK_2a 550 579 IPR002110 GO:0005515
Vifa4g03565 889 Pfam Ankyrin repeats (3 copies) 522 610 IPR002110 GO:0005515
Vifa4g03565 889 SUPERFAMILY Voltage-gated potassium channels 49 293 - -
Vifa4g03565 889 Gene3D - 518 702 IPR036770 -
Vifa4g03565 889 PRINTS Ankyrin repeat signature 551 566 IPR002110 GO:0005515
Vifa4g03565 889 PRINTS Ankyrin repeat signature 664 678 IPR002110 GO:0005515
Vifa4g03565 889 SMART cnmp_10 372 489 IPR000595 -
Vifa4g03565 889 ProSiteProfiles Ankyrin repeat profile. 648 680 IPR002110 GO:0005515
Vifa4g03565 889 CDD CAP_ED 372 477 IPR000595 -
Vifa4g03565 889 ProSiteProfiles Ankyrin repeat profile. 550 582 IPR002110 GO:0005515
Vifa4g03565 889 ProSiteProfiles cAMP/cGMP binding motif profile. 372 474 IPR000595 -
Vifa4g03565 889 PANTHER POTASSIUM CHANNEL AKT1 20 871 IPR045319 GO:0005249|GO:0006813
Vifa4g03565 889 PRINTS EAG/ELK/ERG potassium channel family signature 101 110 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vifa4g03565 889 PRINTS EAG/ELK/ERG potassium channel family signature 67 74 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vifa4g03565 889 PRINTS EAG/ELK/ERG potassium channel family signature 284 293 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vifa4g03565 889 PRINTS EAG/ELK/ERG potassium channel family signature 240 257 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vifa4g03565 889 PRINTS EAG/ELK/ERG potassium channel family signature 90 100 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vifa4g03565 889 PRINTS EAG/ELK/ERG potassium channel family signature 266 277 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vifa4g03565 889 Pfam Ankyrin repeats (many copies) 637 689 IPR002110 GO:0005515
Vifa4g03565 889 SUPERFAMILY cAMP-binding domain-like 297 492 IPR018490 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03565 Vifa-Chr4 1120112151 1120117619 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03565 103 872 Ion Channels AT2G26650 69.430 0.0 1103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03565 K21867 - gmx:100819491 1428.31