Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03564 ATGTTAGGGGAAGTGCAACTTCAGCCTCCACCTATTCAGCAAAACCCTAGTGATTCCGATCCTTTACTCGGTCGCAAAGACGAGGTTCAAGATGATGATGAGTCCCCTGGAAGTTCTACCGAGATTGGGAATCAGGAAGATGTTGAAGCTGGGTTACTCCCTTGTTGTCGAATTTGTCTAGAAACTGATTCTGATTCTGAGGATGAATTGATCTCTCCATGCATGTGCAAAGGAACCCAACAGTTTGTCCATCGTTCATGTCTTGATCACTGGCGCTCAGTAAAGGAAGGATTTGCCTTTTCACACTGCACCACCTGCAAAGCCCAATTTCATCTTAAAGTTGAAAGTTTTGAGGACAACTCTTGTCATAAAATAAAGTTCAGACTTTTTGTGGCAAGGGATGTTTTCCTTGTTTTCCTGGCCATACAAGCTGTGATTGCTGCTATTGGTGGCTTCGCGTACATCATGGACAAAGATGGGAACTTCAGGAACTCTTTTGATGATGGGTGGGATAGGATACTGTCAAAGCATCCAATACCATTTTATTATTGTATCGGAGTGGTGGCCTTCTTTGTACTCATTGGATTTTTTGGCCTCATACTTCATTGCTCTTCCCTCAATAGCAATGACCCCAGAATGGCCGGTTGTCAAAACTGTTGTTACGGATGGGGCATCTTCGATTGCTTTCCCGCATCAATGGAGGCATGCTTTGCCTTTGTGGTTGTTTTTGTTGTCATCTTTGCAATTCTTGGCGTAGCTTATGGTTTTCTTGCAGCCACCATGGGAATTCAGAGAATTTGGCAGAGGCATTACCATATCCTAACCAAGAGGGAGCTTACAAAGGAATACGTGGTAGAAGATCTACAGGGCTGTTATGTCCCACCCAAGCTAGACCCAGAACATGAAAGTCGCCTGAAAATGCTTAAGCTTTTGTGA 936 0.4402 MLGEVQLQPPPIQQNPSDSDPLLGRKDEVQDDDESPGSSTEIGNQEDVEAGLLPCCRICLETDSDSEDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLKVESFEDNSCHKIKFRLFVARDVFLVFLAIQAVIAAIGGFAYIMDKDGNFRNSFDDGWDRILSKHPIPFYYCIGVVAFFVLIGFFGLILHCSSLNSNDPRMAGCQNCCYGWGIFDCFPASMEACFAFVVVFVVIFAILGVAYGFLAATMGIQRIWQRHYHILTKRELTKEYVVEDLQGCYVPPKLDPEHESRLKMLKLL 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03564 311 Pfam RING-variant domain 56 106 IPR011016 GO:0008270
Vifa4g03564 311 SMART ringv_2 55 107 IPR011016 GO:0008270
Vifa4g03564 311 CDD RING_CH-C4HC3_MARCH 56 107 - -
Vifa4g03564 311 MobiDBLite consensus disorder prediction 1 43 - -
Vifa4g03564 311 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 13 311 - -
Vifa4g03564 311 ProSiteProfiles Zinc finger RING-CH-type profile. 48 113 IPR011016 GO:0008270
Vifa4g03564 311 SUPERFAMILY RING/U-box 54 111 - -
Vifa4g03564 311 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 40 120 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03564 Vifa-Chr4 1119789522 1119793076 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03564 1 311 C3H Transcription Factor Family AT1G11020 76.636 1.55e-167 466
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03564 - - gmx:100782178 567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g03564 4 1119789522 1119793076 Vifa4g03564 4 1119789522 1119793076 ECH