Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03563 ATGACAACAACTGCTACAACCACAACCTTAGATGCCATCATGTCTGCCCTAGATATTCCTTTTACAAATCTTATTCAGAATGCACACTTAAGGGACAATTTGCGTTTGTCGGCGTCTTTGATAAAAAATAGGCAAGTCAGATGCTTCTATTTTACCGCTTCTGACTGTACTCCCTTTAACTTTCCTTCTCTGATTTTGTTAAACGTATGCATCAATGATATAATGAAAGACCTACTGGTTCTGATAAAGTCTCCTCCTTTTGCGGATGTTAAAAGCATCATAGTATACTGCAAATTTCAGTCTGAAACTGATCAAATTAGCAGATACTTGAATGATAATAATATCTCGGCAAAGAGTTATCATAGTGGTATTTTTGCAAAGGAACGTGGCAACGTACAGGAGTTGTTTGCTTCAAACAAGATCAGAGTGGTTGTTGCAACTGTGGCATTTGGTATGGGACTAGATAAAAGAGATGTTGGAGCAGTAATTCATTACAGTTTACCTGGAAGTCTGGAAGAGTATGTACAGGAAATAGGACGTGCTGGGAGAGATGGAAGGTTGTCCTACTGTCACCTATTTTATGATGATGAGATGTATTTCAAACTCCGTAGTCTAATGTACAGTGAAGGAGTAGATGAATATGCAGTGAATAAATTTCTGTCTGAAGTGTTTCCTGCTGACAAAAGCTCCTGTGGGAAAATATGTTCGTTAATCAAAGAATCTGCTTCACGCAGATTTGACATGAAGGAAGAGACTTTTGTAACATCCAGTTGGGATCCTTTCCTGCGGGCAGATATAAAGGTTTTTCTACAGAGCAATTCACATGCTCGCTTTACACCAAGAGCTGTTGTGAGGGTTATGCACGGAATTGCAAGCCCAGCCTACCCTTATACAATATGGGGTAAAACCCATTTCTGGGGAAGGTATACCAAGATAGACTTTAAAGTGGTGATGGAAGCAGCAAAGGAAGAACTTAAAAAATTTGTTGGGAAGGATATTCTGTAG 1005 0.392 MTTTATTTTLDAIMSALDIPFTNLIQNAHLRDNLRLSASLIKNRQVRCFYFTASDCTPFNFPSLILLNVCINDIMKDLLVLIKSPPFADVKSIIVYCKFQSETDQISRYLNDNNISAKSYHSGIFAKERGNVQELFASNKIRVVVATVAFGMGLDKRDVGAVIHYSLPGSLEEYVQEIGRAGRDGRLSYCHLFYDDEMYFKLRSLMYSEGVDEYAVNKFLSEVFPADKSSCGKICSLIKESASRRFDMKEETFVTSSWDPFLRADIKVFLQSNSHARFTPRAVVRVMHGIASPAYPYTIWGKTHFWGRYTKIDFKVVMEAAKEELKKFVGKDIL 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03563 334 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 74 224 IPR001650 -
Vifa4g03563 334 Gene3D - 70 254 IPR027417 -
Vifa4g03563 334 SMART helicmild6 104 185 IPR001650 -
Vifa4g03563 334 PANTHER DNA HELICASE RECQ FAMILY MEMBER 1 255 - -
Vifa4g03563 334 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 89 213 IPR027417 -
Vifa4g03563 334 FunFam ATP-dependent DNA helicase Q-like 5 31 252 - -
Vifa4g03563 334 Pfam Helicase conserved C-terminal domain 90 184 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03563 Vifa-Chr4 1118810370 1118813382 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03563 90 217 Eukaryotic Initiation Factors Gene Family AT3G19760 30.000 1.13e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03563 K10730 - gmx:100811214 364.385