Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03551 ATGAAGGAAGAAGATAAAGACCAAGAAACTGGACTTGAGTCTCAACTAGCTTCATGTTTTTCTTCCTCTTGCAAAACTCTTGTTCTTCCTTATAGGCCTGGCTATGGAAAACTTGGGACAAAGTGTCTTGTCAAAGCTAATCACTTTCTTGCAGATATATCAGTATCTGACTTGAGCCAATATGATGTTGTTATAACTCCTGAAGTTAACTCTAGAAAAACAAGAAAATCTATCATAGCTGAGTTAGTGAAGCTTCATCGAAACACTGAGATGGAAAAGAGACTTCCAGCTTATGATGGCTCAAAGACTCTTTACACTTCCGGTCAGCTTCCGTTTACACAGAAAACGTTCGATATACTATTGAGCGAGGAGGATGAGAGAACTTGTAGTACAAGGGAAAGAAAATTTGAAGTTCAAATCAAGTTTGCAGCTCATGTTAGCATGCATCAGTTACATGAGCTTCTCAGTGGGAAAAAAGTTGATACTCCACATGAAGCTCTTAATGTCATTAACATTGTATTGAAGGAGTTTGCATCTCATAGGCTACTCAGAAGTCAGATGGGATTATCACTTAATGTTGACATGTCATCCACGGCGTTTATCGAACCACTCCCTGTGATTGACTTTGTAGCTCAAGTATTAGGAAAACATGTGCACTTAACGCCATTGCCAGACGCAGAACGCATCAAGACTAAGAAAGCCTTAAGAGGTGTGAAAGTAGAAATTACATATAGAGGAAGTGTGAGAAGGAAGTACAAGATAACAGGATTGACATCACAACCTACAAGGGAACTCATTTTCCCTTTGGATAAGCAAATGAACATGCAATCAGTAATTGATTACTTTCAAGAAAAGTATGAATATACAATCATGTATCCCCATTTACCTTGCCTTCAAGTAGGAAGCAAAGAGAAGTTGAACTATTTGCCTATGGAGGTATGCAAGATAGTTGGAGGTCAGAGATATTCAAAAGGGCTTAATGAGAAGCAAATAACTTCTCTGCTAAAGGTCTCGTGCCAGAGACCACATGGAAGGGAGGGTGAAATTCTACAGACGATTCATCAAAATGATTATAACTGTAATCCTTATGCAAAGGAGTTTGGTATCAGCATAGACAACAAGCTTGCATCAGTTGAGGCTCGGGTCTTTCCTGCTCCTTGGTTGAAATATCATGACACTGGAAGAGAGAACAAAATCCTGCCACAAATTGGTCAGTGGAACATGAATAACAAGAAAGTTATAAATGGAGGCAAAGTAACAAATTGGGCATGTATCAATTTCTCAAGAAATGTCCAAGAAAAACTAGCTAATGCATTTTGCCAAAACTTAGTTCAGGCGTGCCAAATATCAGGCATGGAATTTAGTCAGGAACCTGTGATTCCTGTATATTCATTCAGCAAGACCAGACATGAGCTCGAGTTGCTCATTGCTATTCTTCCTGACAGAAACGGCTCTCTCTATGGTGATCTTAAAAAAATCTGCGAAACAGATCTCGGGCTGATTTCCCAATGTTGTCTTACAAAATACGTATTCAAGATTGGTAGACAGTATTTGGAAAATATAGCATTCAAGATCAATGTCAAGATGGGAGGAAGGAACATAGTACTTATGGATGCGATGAGTTCCAAGATTCCATTGGATGTTTGTCCATCCATCGCAGCTGTTGTAGCCTCGCAAGATTGGCCAGGGGTGAGCAAATATGCAGGATTGGTATCTGCTCAGACTCCTAGCGAGGAACATATTCAAGATCTTTTCAAATGTTGGAACGATCCACAGCATGGGACCGTTTATGGCAGCATGATCAGAGAGCTCTTGCTCTCATTTAAGAAGGAGGCAGGAAAAAAACCACATCGGATAATATTTTACAGGGATGGGATATGTCATCCTACGGATTTTGATTTCTACTTGTGCAGTCATGCAGGAATTCAGGGTACAAGTAGGGCAGCTCATTATCATGTTATATGGGACGACAACAACTTCAGTGCCGATGAGATTCAGTCTTTAACTAACAACTTGTGCTACACTTATGCGAGATGTACGCGGTCTGTTTCTGTAGTGCCTCCTGTAACGAATATCGAGTCGGTCCGGCCACTACCAGCTCTAAAAGAGAAGGTCAAGAAAGTAATGTTTTACTGTTGA 2139 0.4021 MKEEDKDQETGLESQLASCFSSSCKTLVLPYRPGYGKLGTKCLVKANHFLADISVSDLSQYDVVITPEVNSRKTRKSIIAELVKLHRNTEMEKRLPAYDGSKTLYTSGQLPFTQKTFDILLSEEDERTCSTRERKFEVQIKFAAHVSMHQLHELLSGKKVDTPHEALNVINIVLKEFASHRLLRSQMGLSLNVDMSSTAFIEPLPVIDFVAQVLGKHVHLTPLPDAERIKTKKALRGVKVEITYRGSVRRKYKITGLTSQPTRELIFPLDKQMNMQSVIDYFQEKYEYTIMYPHLPCLQVGSKEKLNYLPMEVCKIVGGQRYSKGLNEKQITSLLKVSCQRPHGREGEILQTIHQNDYNCNPYAKEFGISIDNKLASVEARVFPAPWLKYHDTGRENKILPQIGQWNMNNKKVINGGKVTNWACINFSRNVQEKLANAFCQNLVQACQISGMEFSQEPVIPVYSFSKTRHELELLIAILPDRNGSLYGDLKKICETDLGLISQCCLTKYVFKIGRQYLENIAFKINVKMGGRNIVLMDAMSSKIPLDVCPSIAAVVASQDWPGVSKYAGLVSAQTPSEEHIQDLFKCWNDPQHGTVYGSMIRELLLSFKKEAGKKPHRIIFYRDGICHPTDFDFYLCSHAGIQGTSRAAHYHVIWDDNNFSADEIQSLTNNLCYTYARCTRSVSVVPPVTNIESVRPLPALKEKVKKVMFYC 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03551 712 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 36 626 - -
Vifa4g03551 712 SMART PAZ_2_a_3 208 340 IPR003100 GO:0005515
Vifa4g03551 712 FunFam Argonaute 10 382 537 - -
Vifa4g03551 712 SUPERFAMILY Ribonuclease H-like 470 689 IPR012337 -
Vifa4g03551 712 Pfam PAZ domain 231 334 IPR003100 GO:0005515
Vifa4g03551 712 Gene3D - 382 535 - -
Vifa4g03551 712 FunFam Protein argonaute-2 197 323 - -
Vifa4g03551 712 Pfam Mid domain of argonaute 401 464 IPR032473 -
Vifa4g03551 712 SUPERFAMILY PAZ domain 198 359 IPR036085 GO:0005515
Vifa4g03551 712 Gene3D - 626 712 IPR036397 GO:0003676
Vifa4g03551 712 Gene3D - 536 625 IPR036397 GO:0003676
Vifa4g03551 712 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 24 - -
Vifa4g03551 712 Pfam N-terminal domain of argonaute 41 174 IPR032474 -
Vifa4g03551 712 ProSiteProfiles PAZ domain profile. 204 318 IPR003100 GO:0005515
Vifa4g03551 712 SMART Piwi_a_2 474 693 IPR003165 GO:0003676
Vifa4g03551 712 CDD PAZ_argonaute_like 203 317 - -
Vifa4g03551 712 Gene3D paz domain 197 322 - -
Vifa4g03551 712 Pfam Piwi domain 626 690 IPR003165 GO:0003676
Vifa4g03551 712 Pfam Piwi domain 475 625 IPR003165 GO:0003676
Vifa4g03551 712 ProSiteProfiles Piwi domain profile. 628 689 IPR003165 GO:0003676
Vifa4g03551 712 Pfam Argonaute linker 2 domain 345 390 IPR032472 -
Vifa4g03551 712 ProSiteProfiles Piwi domain profile. 474 626 IPR003165 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03551 Vifa-Chr4 1115471172 1115475621 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03551 626 712 Eukaryotic Initiation Factors Gene Family AT5G43810 59.504 1.30e-37 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03551 K11593 - gmx:100808457 904.434
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g03551 4 1115471172 1115475621 Vifa4g03551 4 1115471172 1115475621 ECH
Vifa4g03551 4 1115471172 1115475621 Vifa2g02298 2 595096813 595104265 PCT