Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03550 ATGACGCTAGACGATGATAGCTCCATATACGTTGGGGGTCTTCCCTACGACGCTACCGAAGATACAATTCGCACTGTCTTCAATTTGTATGGTGCCATTCTTGATGTCAAGATTATCAATGACCAACGTACTGTCGGCAAATGCTATTGCTTTGTTACTTTCACAAACCCTAGGTCTGCAATTGATGCTATCAACGACATGAATGGAAGAAGTATTAGTGGGCGCGTGGTCAAAGTTAATGGAGTGAACGGCGGTGGTGGTAGGTCAAATTTTGGGAGAGAAAGAGAACGTTATTATCATCATAATGATGAAAGGAATGGAGATTGGGATCGTGGAAGAGATAGAGAGATTCGAGACCAAGATTATGAGCGTGGCAGTGGCAGAGATCATATTCGAGAGCAAAATTATGATCATGGTAATGAGAAAGAAGGATATAGGAGTAGAGGCAGTGATTGGACTCGACATGGTGATAGGTCTCGAGACCGTGATAGGTCTCGGGATCGTGATAGGTCGCGAGACCATGACAGGGGTAGGGATAGGAGAGTCGAACATGTGCAAGATTATGACGATCAAGGTAGAGAAAGCATGTTAGATGATGATTGGAACCGTGATGATGATAGGGCTGAAAATCAACAAGAAAACAGCAGGGTACATGGTGGGGATGTGGATAGAGACCATAACTCGAACGTGGATACTGAGAGAAAGATGGACAGGGTTAGTGATCCTGATAACAGTTTTGATGAACCTAAGAGAGAATCGTCGAGGAGAAACATAGATTTGAATGTGTCAAATGAAAATAGTCCATCAGATTCTACTGATGACCACAATGATGAGGCAGAAGATGAGTTAGAGCAGTCAATCCAAGAACTTGATAATCTAAAAAAGGAGGTTTCTAAACTGGAAGAGAGAGTGGAAGAAAGAAGACTTAATGTTACGGAGTTACAAAAACACTCTAAGAAACTGGAGGATGCGGTGATTTCTGCAAAGAAACAATCTTTATATCGCCAGATGCAGTTGACCAAGCTGCACGAATGTTTTCTGCAAGTGCAAGATTCCACAGAAAGACTTAAAACCAGTGAAAAAGAATTCAAGGTTCTAGTTGATTCAGTAATGTTTGAGAATGATGGTGATGGGAGTCTTGGACAACTTACAAATGGAAGTCTTGATGGTAAATAG 1176 0.4184 MTLDDDSSIYVGGLPYDATEDTIRTVFNLYGAILDVKIINDQRTVGKCYCFVTFTNPRSAIDAINDMNGRSISGRVVKVNGVNGGGGRSNFGRERERYYHHNDERNGDWDRGRDREIRDQDYERGSGRDHIREQNYDHGNEKEGYRSRGSDWTRHGDRSRDRDRSRDRDRSRDHDRGRDRRVEHVQDYDDQGRESMLDDDWNRDDDRAENQQENSRVHGGDVDRDHNSNVDTERKMDRVSDPDNSFDEPKRESSRRNIDLNVSNENSPSDSTDDHNDEAEDELEQSIQELDNLKKEVSKLEERVEERRLNVTELQKHSKKLEDAVISAKKQSLYRQMQLTKLHECFLQVQDSTERLKTSEKEFKVLVDSVMFENDGDGSLGQLTNGSLDGK 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03550 391 PANTHER GEO13361P1-RELATED 7 179 - -
Vifa4g03550 391 MobiDBLite consensus disorder prediction 90 258 - -
Vifa4g03550 391 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 2 101 - -
Vifa4g03550 391 Gene3D - 2 98 IPR012677 -
Vifa4g03550 391 CDD RRM_SF 9 75 - -
Vifa4g03550 391 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 84 IPR000504 GO:0003723
Vifa4g03550 391 SMART rrm1_1 8 80 IPR000504 GO:0003723
Vifa4g03550 391 SUPERFAMILY RNA-binding domain, RBD 4 108 IPR035979 GO:0003676
Vifa4g03550 391 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 78 IPR000504 GO:0003723
Vifa4g03550 391 MobiDBLite consensus disorder prediction 79 283 - -
Vifa4g03550 391 Coils Coil 269 331 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03550 2 79 Eukaryotic Initiation Factors Gene Family AT1G71770 30.769 9.90e-07 48.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g03550 4 1115232480 1115234825 Vifa4g03550 4 1115232480 1115234825 ECH