Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03548 ATGGCATCACCATCTGAACTAGGCTTGGATTGCAAGCCACATAGCTACTCCATGTTGCTTAAATCAGTTGGAGAACAAAGTGATCAAACATACAAACTCGAAGAGTTTGTTTCTCGTTTGGAAGAAGAACGTCTCAAGATTGATGCGTTCAAACGTGAACTTCCTCTCTGCATGCAACTTCTCACAAACGCTATGGAGGCGTCGAAGCAACAACTTCAAGCTTACAAAGTGAGTCAAGGAGTTACAAAGCCGATTCTCGAAGAATTCATACCGGTAAAGGAAGTAACATCATCAGAAACCATGGAAAAGATAACGAATAATAATGTATGTGATAAGGCAAATTGGATGACGAGTGCTCAACTATGGAGTCAAACAACAGAAGGAACAAAACAACAAAACTCCACAAAAGAAATCACTGAAAGCAACAATATTGGATTCAACATTAGTCCTAAACATAGAAACGGTGGAGCCTTTTTACCCTTCTCAAAAGAAAGAAACAACTCACCATGCCAAAACCAGGGCGGTCTTCCTGAACTAGCACTTGCTTCTAACCAGAAAGAGGTTGAGGATAAGAAACATGTTGCAGAGGAAAAAGGAGACAAGAGAGAAAACACCCAAGAAAAAGGAAGTCCAGTAGCATCATCACATACTCAAACAACAAGCAACAATTCAAACCAAACTCATAGGAAAGCAAGAAGGTGTTGGTCACCGGACTTACACCGCAGATTCGTCAATGCTCTTCAAATGCTCGGAGGATCTCAAGTGGCAACACCAAAACAAATAAGGGAATTGATGAAGGTGGATGGTTTGACCAATGATGAAGTTAAAAGCCATTTACAGAAATATAGGCTACACACAAGAAGACCAAGCCTAGGTGCACAACCAGGTGCACCAGCGGCACAGCTAGTTGTTTTAGGAGGAATATGGGTCCCACCGGAATACGCCACCGCGCATTCAGGAGGAGCAACTACTCTCTACGGTGGGCATCCTACTTCTCATCATATGACTCTGCCACACTACTGTACTGCACCTGGTCAGGAGTATTATACTACTGCAGCACCGCCGCAGCATCAGCAGCTACTTCCGCCGCCGCATCATATGCATCATGTTTACAAGGCGACGCCGAATGGTCAGGGATCGCCGGACACGGGTGGAGATGGGTTGGAGAGTATTGAAAATGGGAAGTCGGAGAGTGGGAGCTGGAAAGAAGGGAGTTCTGAGAATGAAGGAGAGAGGAAAGGGTTTGTTGAAGAGAGCAATGGGAGTGAAATCACTCTCAAATTTTAA 1287 0.4429 MASPSELGLDCKPHSYSMLLKSVGEQSDQTYKLEEFVSRLEEERLKIDAFKRELPLCMQLLTNAMEASKQQLQAYKVSQGVTKPILEEFIPVKEVTSSETMEKITNNNVCDKANWMTSAQLWSQTTEGTKQQNSTKEITESNNIGFNISPKHRNGGAFLPFSKERNNSPCQNQGGLPELALASNQKEVEDKKHVAEEKGDKRENTQEKGSPVASSHTQTTSNNSNQTHRKARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSLGAQPGAPAAQLVVLGGIWVPPEYATAHSGGATTLYGGHPTSHHMTLPHYCTAPGQEYYTTAAPPQHQQLLPPPHHMHHVYKATPNGQGSPDTGGDGLESIENGKSESGSWKEGSSENEGERKGFVEESNGSEITLKF 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03548 428 MobiDBLite consensus disorder prediction 355 428 - -
Vifa4g03548 428 MobiDBLite consensus disorder prediction 124 149 - -
Vifa4g03548 428 FunFam Myb family transcription factor 229 287 - -
Vifa4g03548 428 SUPERFAMILY Homeodomain-like 227 288 IPR009057 -
Vifa4g03548 428 Coils Coil 33 53 - -
Vifa4g03548 428 MobiDBLite consensus disorder prediction 164 179 - -
Vifa4g03548 428 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 227 287 IPR017930 -
Vifa4g03548 428 Pfam Myb-like DNA-binding domain 232 283 IPR001005 -
Vifa4g03548 428 MobiDBLite consensus disorder prediction 184 207 - -
Vifa4g03548 428 MobiDBLite consensus disorder prediction 124 234 - -
Vifa4g03548 428 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 20 402 IPR044787 GO:0003700|GO:0006355
Vifa4g03548 428 NCBIfam myb-like DNA-binding domain, SHAQKYF class 230 285 IPR006447 GO:0003677
Vifa4g03548 428 Gene3D - 229 287 - -
Vifa4g03548 428 MobiDBLite consensus disorder prediction 402 418 - -
Vifa4g03548 428 MobiDBLite consensus disorder prediction 208 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03548 Vifa-Chr4 1115011122 1115012805 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03548 1 428 G2-like Transcription Factor Family AT2G03500 50.427 4.81e-118 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vifa4g03548 Myb_DNA-binding 9e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03548 - - tpra:123921036 685.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g03548 4 1115011122 1115012805 Vifa4g03548 4 1115011122 1115012805 ECH