Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03547 ATGAAGACTAGTTTGTGTCTTGTTATAGATTACTCAACAACAGCATCACAAACAGAAGAGGTTTGTGAAATACTAGGAAACTCACAAAAACTAGTCCATGAAATTGTTCAAGTTGTTGTTAACAGAAATTGTGATAATCTTTCTGAGGCTGCAATTAAGGCCTTATCAGCATTATGTTCATTGGAATCAAACAAAGAGAGTTTAGTGAAAGGAGGAGCAATAGATGGAATCATAAGATATATTTCAAGATGTGATACTACAAGACAGAAGAATTTGGCTCCACTTGCAATGACAACAATGATGAAGCTTTTGGTGTTGGAGAGTGGTAAAGAGGCATTGGTGAATCATGTGAATGGTATTGAAACATTGGTGAAGATGGTTTTTAAGGTATGTAATCAAGAGTGTAGTGAGAGTGCTGTTGGGATACTTTCAATTGTTTGTAGTGATTTTGGGAGTGCTAGAGAGGTAGCTATTGGAACTGGTGTTTTGAGTCAGTTGTTGTTTCTTTTGCAGAGTCAGTGTGGTACTAAAACTAAAACTAAGGCAAGAATGTTGCTTAAGTTGTTGAGATCCAAGTGGACTGAGGAATCAATGCATTAG 600 0.365 MKTSLCLVIDYSTTASQTEEVCEILGNSQKLVHEIVQVVVNRNCDNLSEAAIKALSALCSLESNKESLVKGGAIDGIIRYISRCDTTRQKNLAPLAMTTMMKLLVLESGKEALVNHVNGIETLVKMVFKVCNQECSESAVGILSIVCSDFGSAREVAIGTGVLSQLLFLLQSQCGTKTKTKARMLLKLLRSKWTEESMH 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03547 199 PANTHER WDSAM1 PROTEIN 21 196 IPR045185 GO:0061630
Vifa4g03547 199 Gene3D - 11 196 IPR011989 -
Vifa4g03547 199 SUPERFAMILY ARM repeat 18 189 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03547 Vifa-Chr4 1114946442 1114947041 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03547 8 195 U-box Gene Family AT3G19380 30.570 5.95e-13 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03547 - - mtr:11418942 327.791